R/IDOLOptimizedCpGs.R

In immunomethylomics/FlowSorted.Blood.EPIC: Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

#'     IDOL Optimized CpGs for adult blood DNA methylation deconvolution EPIC
#'
#' @description
#'     This object is a vector of length 450 consisting of the names of the IDOL
#'     optimized CpGs.  These CpGs are used as the backbone for deconvolution
#'     and were selected because their methylation signature differs across the
#'     six normal leukocyte subtypes.
#'
#'
#' @format An object of class "character" of length 450.
#'
#'         The format is:
#'         chr [1:450] "cg08769189" "cg07661835" "cg00219921" "cg13468685" ...
#'
#' @references LA Salas et al. (2018). \emph{An optimized library for
#' reference-based deconvolution of whole-blood biospecimens assayed using the
#' Illumina HumanMethylationEPIC BeadArray}. Genome Biology 19, 64. doi:
#' \href{https://dx.doi.org/10.1186/s13059-018-1448-7}{10.1186/s13059-018-1448-7}
#' @references DC Koestler et al. (2016). \emph{Improving cell mixture
#' deconvolution by identifying optimal DNA methylation libraries (IDOL)}.
#' BMC bioinformatics. 17, 120. doi:
#' \href{https://dx.doi.org/10.1186/s13059-018-1448-7}{10.1186/s13059-018-1448-7}.
#'
#' @examples
#' # Do not run
#' # head(IDOLOptimizedCpGs)
"IDOLOptimizedCpGs"