public_matrix: Get a matrix with public clonotype frequencies
In immunomind/immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires
public_matrix R Documentation
Get a matrix with public clonotype frequencies
Description
Get a matrix with public clonotype frequencies
Usage
public_matrix(.data)
Arguments
.data
Public repertoire, an output from pubRep.
Value
Matrix with per-sample clonotype counts / proportions only.
Examples
data(immdata)
immdata$data <- lapply(immdata$data, head, 2000)
pr <- pubRep(immdata$data, .verbose = FALSE)
pr.mat <- public_matrix(pr)
dim(pr.mat)
head(pr.mat)
immunomind/immunarch documentation built on March 20, 2024, 12:01 p.m.
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| public_matrix | R Documentation |
Get a matrix with public clonotype frequencies
Description
Get a matrix with public clonotype frequencies
Usage
public_matrix(.data)
Arguments
.data |
Public repertoire, an output from pubRep. |
Value
Matrix with per-sample clonotype counts / proportions only.
Examples
data(immdata)
immdata$data <- lapply(immdata$data, head, 2000)
pr <- pubRep(immdata$data, .verbose = FALSE)
pr.mat <- public_matrix(pr)
dim(pr.mat)
head(pr.mat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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