bunch_translate: Nucleotide to amino acid sequence translation

In immunomind/immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Nucleotide to amino acid sequence translation

Description

Nucleotide to amino acid sequence translation

Usage

bunch_translate(.seq, .two.way = TRUE, .ignore.n = FALSE)

Arguments

.seq	Vector or list of strings.
.two.way	Logical. If TRUE (default) then translate from the both ends (like MIXCR).
.ignore.n	Logical. If FALSE (default) then return NA for sequences that have N, else parse triplets with N as ~

Value

Character vector of translated input sequences.

Examples

data(immdata)
head(bunch_translate(immdata$data[[1]]$CDR3.nt))

immunomind/immunarch documentation built on March 20, 2024, 12:01 p.m.