inla.spde.make.A: Observation/prediction matrices for mesh models.

In inbo/INLA: Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations

Description

Constructs observation/prediction weight matrices for models based on inla.mesh and inla.mesh.1d objects.

Usage

inla.spde.make.A(mesh = NULL, loc = NULL, index = NULL,
                 group = NULL, repl = 1L,
                 n.spde = NULL, n.group = NULL, n.repl = NULL,
                 group.mesh = NULL,
                 weights = NULL,
                 A.loc = NULL, A.group = NULL, group.index = NULL,
                 block = NULL, n.block = NULL,
                 block.rescale = c("none", "count", "weights", "sum"),
                 ...)

Arguments

mesh	An inla.mesh or inla.mesh.1d object specifying a function basis on a mesh domain. Alternatively, an inla.spde object that includes a mesh (e.g. from inla.spde2.matern).
loc	Observation/prediction coordinates. mesh and loc defines a matrix A.loc of mapping weights between basis function weights and field values. If loc is NULL, A.loc is defined as Diagonal(n.spde, 1).
index	For each observation/prediction value, an index into loc. Default is seq_len(nrow(A.loc)).
group	For each observation/prediction value, an index into the group model.
repl	For each observation/prediction value, the replicate index.
n.spde	The number of basis functions in the mesh model. (Note: may be different than the number of mesh vertices/nodes/knots.)
n.group	The size of the group model.
n.repl	The total number of replicates.
group.mesh	An optional inla.mesh.1d object for the group model.
weights	Optional scaling weights to be applied row-wise to the resulting matrix.
A.loc	Optional precomputed observation/prediction matrix. A.loc can be specified instead of mesh+loc, optionally with index supplied.
A.group	Optional precomputed observation/prediction matrix for the group model. A.group can be specified instead of group and/or group.mesh, optionally with group.index supplied.
group.index	For each observation/prediction value, an index into the rows of A.group.
block	Optional indices specifying block groupings: Entries with the same block value are joined into a single row in the resulting matrix, and the block values are the row indices. This is intended for construction of approximate integration schemes for regional data problems. See inla.spde.make.block.A for details.
n.block	The number of blocks.
block.rescale	Specifies what scaling method should be used when joining entries as grouped by a block specification. See inla.spde.make.block.A for details.
...	Additional parameters. Currently unused.

Author(s)

Finn Lindgren [e-mail]

See Also

inla.spde.make.index

Examples

loc = matrix(runif(10000*2)*1000,10000,2)
mesh = inla.mesh.2d(loc=loc,
                    cutoff=50,
                    max.edge=c(50,500))
A = inla.spde.make.A(mesh, loc=loc)

inbo/INLA documentation built on Dec. 6, 2019, 9:51 a.m.