Man pages for informatik-mannheim/gcat-base
Genetic Code Analysis Toolkit for R - GCAT Base Package (gcatbase)
| aa_prop | Amino acid properties. |
| all_tuples | Create all tuples of size 'n'. |
| alphabet | Get the alphabet defined by the letters in the string. |
| amino_acids | Generic function for amino acids. |
| amino_acids.character | Translate codons into amino acids. |
| amino_acids.default | Default implementation of the generic function for amino... |
| amino_acids.gcat.code | Translate codons of a code into amino acids. |
| as.char.vector | Convert string into vector of characters. |
| classify | Map a sequence to classes "in code" (1) or "out of code" (0). |
| code | Create a code from a list of tuples. |
| compl | Complementary DNA tuples. |
| flatten | Process elements in a list and flatten the results. |
| get.id | Returns the id of a code or the default id ("unkn."). |
| normalize | Normalize a nucleotide sequence. Default is DNA bases and... |
| nuc_bases | Vector of DNA nucleotide bases as characters. |
| print.gcat.alphabet | Pretty prints an alphabet. |
| print.gcat.code | Pretty prints a code. |
| random_code | Random code. |
| read_codes | Read one or more codes from file. |
| rev_compl | Reversed and complementary tuples. |
| shift | Shift each tuple (or sequence) in a vector for 'k' positions... |
| split | Split string sequence into tupels (codons). |
| summary.gcat.code | Give a summary for a code. |
| truncate | Truncate a string at the beginning. |
| tsize | The size or sizes of a code's tuples. |
| tuples_freq | Frequencies of tuples (codon). |
| write_codes | Write one or more codes to a file. |
