split: Split string sequence into tupels (codons).

In informatik-mannheim/gcat-base: Genetic Code Analysis Toolkit for R - GCAT Base Package (gcatbase)

Split string sequence into tupels (codons).

Description

A sequence can be split either by passing the parameter tsize or the parameter sep. If sep is set, tsize is ignored.

Usage

split(seq, tsize = 3, sep = NULL, regexp.sep = NULL)

Arguments

seq	Sequence as a string.
tsize	Tuple size. Default: 3 for codons.
sep	Separator, e.g. ","
regexp.sep	Separator as regular expression, e.g. "[, ]+"

Details

In case of tsize only tuples of exact this size are returned. If the last tuple has less than tsize bases it is skipped.

On the other hand, if set is used, all tuples are returned. There is also no check if the tuples have the same size.

Value

Vector of tuples. Each tuple is a string.

informatik-mannheim/gcat-base documentation built on Nov. 7, 2023, 7:18 a.m.