normalize: Normalize a nucleotide sequence. Default is DNA bases and...
In informatik-mannheim/gcat-base: Genetic Code Analysis Toolkit for R - GCAT Base Package (gcatbase)
normalize R Documentation
Normalize a nucleotide sequence. Default is DNA bases and upper-case letters.
Description
Note that unknown bases (e.g. letter K) do not raise any exceptions.
Usage
normalize(seqv, RNA = FALSE, lowercase = FALSE)
Arguments
seqv
A vector of sequences as a string to be processed.
RNA
If true, RNA bases are used, i.e. T becomes U.
If false (default), DNA bases are used, i.e. U becomes T.
lowercase
If true, all letters are converted to lowercase (ATG -> atg).
IF false (default), all letters will be uppercase (atg -> ATG)
Value
Normalized string
Examples
normalize("auggcc") # will yield ATGGCC.
informatik-mannheim/gcat-base documentation built on Nov. 7, 2023, 7:18 a.m.
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| normalize | R Documentation |
Normalize a nucleotide sequence. Default is DNA bases and upper-case letters.
Description
Note that unknown bases (e.g. letter K) do not raise any exceptions.
Usage
normalize(seqv, RNA = FALSE, lowercase = FALSE)
Arguments
seqv |
A vector of sequences as a string to be processed. |
RNA |
If true, RNA bases are used, i.e. T becomes U. If false (default), DNA bases are used, i.e. U becomes T. |
lowercase |
If true, all letters are converted to lowercase (ATG -> atg). IF false (default), all letters will be uppercase (atg -> ATG) |
Value
Normalized string
Examples
normalize("auggcc") # will yield ATGGCC.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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