Man pages for inlabru-org/inlabru
Bayesian Latent Gaussian Modelling using INLA and Extensions

add_mappersAdd component input/latent mappers
as_bru_compConversion methods for 'bru_comp' and 'bru_comp_list' objects
as_bru_mapperMethods for mapper extraction
as_bru_obsConversion methods for 'bru_obs' and 'bru_obs_list' objects
bincount1D LGCP bin count simulation and comparison with data
bm_aggregateMapper for aggregation
bm_collectMapper for concatenated variables
bm_constConstant mapper
bm_factorMapper for factor variables
bm_fmesherMapper for general 'fmesher' function space objects
bm_fm_mesh_1dMapper for 'fm_mesh_1d'
bm_fm_mesh_2dMapper for 'fm_mesh_2d'
bm_harmonicsMapper for cos/sin functions
bm_indexMapper for indexed variables
bm_linearMapper for a linear effect
bm_listMethods for mapper lists
bm_logsumexpMapper for log-sum-exp aggregation
bm_marginalMapper for marginal distribution transformation
bm_matrixMapper for matrix multiplication
bm_mesh_BMapper for basis conversion
bm_multiMapper for tensor product domains
bm_pipeMapper for linking several mappers in sequence
bm_repeatMapper for repeating a mapper
bm_repeat_indexingRe-indexing matrix for repeated mappers
bm_scaleMapper for element-wise scaling
bm_shiftMapper for element-wise shifting
bm_sumMapper for adding multiple mappers
bm_summarymapper object summaries
bm_taylorMapper for linear Taylor approximations
bruConvenient model fitting using (iterated) INLA
bru_call_optionsAdditional bru options
bru_compLatent model component construction
bru_comp_evalEvaluate component values in predictor expressions
bru_comp_listMethods for inlabru component lists
bru_compute_linearisationCompute inlabru model linearisation information
bru_convergence_plotPlot inlabru convergence diagnostics
bru_env_getGet access to the internal environment
bru_eval_in_data_contextEvaluate expressions in data contexts
bru_fill_missingFill in missing values in Spatial grids
bru_formula_to_bru_obs_codeConvert components to R code
bru_get_mapperExtract mapper information from INLA model component objects
bru_indexExtract predictor or component index information
bru_infoMethods for bru_info objects
bru_inla.stack.mexpandBackwards compatibility to handle mexpand for INLA <=...
bru_inla.stack.mjoinJoin stacks intended to be run with different likelihoods
bru_inputObtain component inputs
bru_is_additiveCheck for predictor expression additivity
bru_logAccess methods for 'bru_log' objects
bru_log_bookmarkMethods for 'bru_log' bookmarks
bru_log_messageAdd a log message
bru_log_newCreate a 'bru_log' object
bru_log_offsetPosition methods for 'bru_log' objects
bru_log_resetClear log contents
bru_make_stackBuild an inla data stack from linearisation information
bru_mapperConstructors for 'bru_mapper' objects
bru_mapper_genericsGeneric methods for bru_mapper objects
bru_modelCreate an inlabru model object from model components
bru_model_mapper_methodsMapper methods for model objects
bru_obsObservation model construction for usage with 'bru()'
bru_obs_methodsUtility functions for bru observation model objects
bru_obs_printSummary and print methods for observation models
bru_optionsCreate or update an options objects
bru_response_sizeResponse size queries
bru_safe_inlaLoad INLA safely for examples and tests
bru_safe_spCheck for potential 'sp' version compatibility issues
bru_set_missingSet missing values in observation models
bru_standardise_namesStandardise inla hyperparameter names
bru_summariseSummarise and annotate data
bru_timingsExtract timing information from fitted bru object
bru_timings_plotPlot inlabru iteration timings
bru_transformationTransformation tools
bru_usedList components used in a model
bru_used_updateUpdate used_component information objects
bru_used_varsExtract basic variable names from expression
deltaICSummarise DIC and WAIC from 'lgcp' objects.
devel.cvmeasureVariance and correlations measures for prediction components
eval_spatialEvaluate spatial covariates
evaluate_effectEvaluate a component effect
evaluate_modelEvaluate or sample from a posterior result given a model and...
evaluate_predictorEvaluate component effects or expressions
expand_labelsExpand labels
extract_propertyExtract a summary property from all results of an inla result
generateGenerate samples from fitted bru models
ggggplot2 geomes for inlabru related objects
gg.bru_predictionGeom for predictions
gg.data.frameGeom for data.frame
gg.fm_mesh_1dGeom for fm_mesh_1d objects
gg.fm_mesh_2dGeom for fm_mesh_2d objects
gg.matrixGeom for matrix
gg.RasterLayerGeom for RasterLayer objects
gg.sfGeom helper for sf objects
gg.SpatialGridDataFrameGeom for SpatialGridDataFrame objects
gg.SpatialLinesGeom for SpatialLines objects
gg.SpatialPixelsGeom for SpatialPixels objects
gg.SpatialPixelsDataFrameGeom for SpatialPixelsDataFrame objects
gg.SpatialPointsGeom for SpatialPoints objects
gg.SpatialPolygonsGeom for SpatialPolygons objects
gg.SpatRasterGeom wrapper for SpatRaster objects
globeVisualize a globe using RGL
glplotRender objects using RGL
gorillasDeprecated alias for sp version of the gorillas dataset
gorillas_sfGorilla nesting sites in sf format
iinlaIterated INLA
inlabru-deprecatedDeprecated functions in inlabru
inlabru-packageinlabru
inla_subset_evalObtain inla index subset information
lgcpLog Gaussian Cox process (LGCP) inference using INLA
local_testthatUnit test helpers
materncov.bandsMatern correlation or covariance function approximate...
mexdolphinDeprecated alias for sp version of the mexdolphin dataset
mexdolphin_sfPan-tropical spotted dolphins in the Gulf of Mexico
mrseaMarine renewables strategic environmental assessment
multiplotMultiple ggplots on a page.
parse_inclusionParse inclusion of component labels in a predictor expression
pcmatern_BMake hierarchical mesh basis functions
plot.bruPlot method for posterior marginals estimated by bru
plot.bru_predictionPlot prediction using ggplot2
plotsampleCreate a plot sample.
point2countConvert a plot sample of points into one of counts.
Poisson1_1D1-Dimensional Homogeneous Poisson example.
Poisson2_1D1-Dimensional NonHomogeneous Poisson example.
Poisson3_1D1-Dimensional NonHomogeneous Poisson example.
predict.bruPrediction from fitted bru model
reexportsObjects exported from other packages
robins_subsetrobins_subset
sample.lgcpSample from an inhomogeneous Poisson process
shrimpBlue and red shrimp in the Western Mediterranean Sea
slineConvert data frame to SpatialLinesDataFrame
spatial.to.pppConvert SpatialPoints and boundary polygon to spatstat ppp...
spde.posteriorPosteriors of SPDE hyper parameters and Matern correlation or...
spolyConvert a data.frame of boundary points into a...
summary.bruSummary for an inlabru fit
summary.bru_compSummarise components
summary.bru_inputSummarise component inputs
summary.bru_optionsPrint inlabru options
toygroupsSimulated 1D animal group locations and group sizes
toypointsSimulated 2D point process data
inlabru-org/inlabru documentation built on July 17, 2025, 2:11 a.m.