bru_used: List components used in a model

In inlabru-org/inlabru: Bayesian Latent Gaussian Modelling using INLA and Extensions

List components used in a model

Description

Create or extract information about which components are used by a model, or its individual observation models. If a non-NULL labels argument is supplied, also calls bru_used_update() on the bru_used objects.

Usage

bru_used(x = NULL, ...)

## S3 method for class ''NULL''
bru_used(
  x = NULL,
  ...,
  effect = NULL,
  effect_exclude = NULL,
  latent = NULL,
  labels = NULL
)

## S3 method for class 'character'
bru_used(
  x,
  ...,
  effect = NULL,
  effect_exclude = NULL,
  latent = NULL,
  labels = NULL
)

## S3 method for class 'expression'
bru_used(
  x,
  ...,
  effect = NULL,
  effect_exclude = NULL,
  latent = NULL,
  labels = NULL
)

## S3 method for class 'formula'
bru_used(
  x,
  ...,
  effect = NULL,
  effect_exclude = NULL,
  latent = NULL,
  labels = NULL
)

## S3 method for class 'bru'
bru_used(x, ..., join = TRUE)

## S3 method for class 'list'
bru_used(x, ..., join = TRUE)

## S3 method for class 'bru_like'
bru_used(x, ...)

## S3 method for class 'bru_used'
bru_used(x, labels = NULL, ...)

## S3 method for class 'bru_used'
format(x, ...)

## S3 method for class 'bru_used'
summary(object, ...)

## S3 method for class 'bru_used'
print(x, ...)

Arguments

x	An object that contains information about used components
...	Parameters passed on to the other methods
effect	character; components used as effects. When NULL, auto-detect components to include all components in a predictor expression.
effect_exclude	character; components to specifically exclude from effect evaluation. When NULL, do not specifically exclude any components.
latent	character; components used as ⁠_latent⁠ or ⁠_eval()⁠. When NULL, auto-detect components.
labels	character; component labels passed on to bru_used_update()
join	Whether to join list output into a single object; Default may depend on the input object class

Details

The arguments effect, effect_exclude, and latent control what components and effects are available for use in predictor expressions.

effect

Character vector of component labels that are used as effects by the predictor expression; If NULL (default), the names are extracted from the formula.

exclude

Character vector of component labels to be excluded from the effect list even if they have been auto-detected as being necessary. Default is NULL; do not remove any components from the inclusion list.

include_latent

Character vector. Specifies which latent state variables need to be directly available to the predictor expression, with a ⁠_latent⁠ suffix. This also makes evaluator functions with suffix ⁠_eval⁠ available, taking parameters main, group, and replicate, taking values for where to evaluate the component effect that are different than those defined in the component definition itself (see bru_component_eval()). If NULL, the use of ⁠_latent⁠ and ⁠_eval⁠ in the predictor expression is detected automatically.

Value

A bru_used object (a list with elements effect and latent), or a list of such objects (for methods with join = FALSE)

Methods (by class)

• bru_used(`NULL`): Create a bru_used object from effect name character vectors.

• bru_used(character): Create a bru_used object from a character representation of an expression.

• bru_used(expression): Create a bru_used object from an expression object.

• bru_used(formula): Create a bru_used object from a formula (only the right-hand side is used).

• bru_used(bru): Extract the bru_used information for the collection of observation models used in a bru object.

• bru_used(list): Extract the bru_used information for each element of a list, and optionally join into a single bru_used object.

• bru_used(bru_like): Extract the bru_used information for the collection of observation models used in a bru observation model bru_like object.

• bru_used(bru_used): Convenience method that takes an existing bru_used object and calls bru_used_update() if labels is non-NULL.

Methods (by generic)

• format(bru_used): Text formatting method for bru_used objects.

• summary(bru_used): Summary method for bru_used objects.

• print(bru_used): Print method for bru_used objects.

See Also

Other bru_used: bru_used_update(), bru_used_vars()

Examples

(used <- bru_used(~.))
bru_used(used, labels = c("a", "c"))
(used <- bru_used(~ a + b + c_latent + d_latent))
bru_used(used, labels = c("a", "c"))
(used <- bru_used(expression(a + b + c_latent + d_latent)))
bru_used(used, labels = c("a", "c"))

inlabru-org/inlabru documentation built on April 5, 2025, 2:08 a.m.