getInteractionEffects: Get interaction effects from generalized linear model...

In insilico/npdro: Nearest-neighbor Projected-Distance Regression Optimized

Get interaction effects from generalized linear model regression.

Description

getInteractionEffects

Usage

getInteractionEffects(
  depVarName = "class",
  labelledDataFrame,
  regressionFamily = "binomial",
  numCovariates = 0,
  writeBetas = FALSE,
  excludeMainEffects = FALSE,
  interactOutput = "stdBetas",
  transformMethod = "",
  numCores = 2,
  verbose = FALSE
)

Arguments

depVarName	string name of class column (e.g., "class")
labelledDataFrame	data.frame with variables in columns and samples in rows.
regressionFamily	string glm regression family name.
numCovariates	numeric of included covariates.
writeBetas	logical indicating whether to write beta values to separate file.
excludeMainEffects	logical indicating whether to exclude main effect terms.
interactOutput	string output in return matrix, "indicating betas "Betas", "stdBetas", "Pvals".
transformMethod	string optional transform method.
numCores	numeric number of processor cores to use in mclapply
verbose	logical to send verbose messages to stdout.

Value

results matrix of variable by variable regression coefficients.

See Also

Other GAIN functions: dcgain(), dmgain(), fitInteractionModel(), fitMainEffectModel(), gainToSimpleSIF(), getMainEffects(), regainParallel(), regain()

insilico/npdro documentation built on July 1, 2023, 2:56 p.m.