getMainEffects: Get main effects from generalized linear model regression...

In insilico/npdro: Nearest-neighbor Projected-Distance Regression Optimized

Get main effects from generalized linear model regression (parallel).

Description

getMainEffects

Usage

getMainEffects(
  labelledDataFrame,
  regressionFamily = "binomial",
  numCovariates = 0,
  writeBetas = FALSE,
  useBetas = FALSE,
  transformMethod = "",
  numCores = 2,
  verbose = FALSE
)

Arguments

labelledDataFrame	data.frame with variables in columns and samples in rows.
regressionFamily	string glm regression family name.
numCovariates	numeric of included covariates.
writeBetas	logical indicating whther to write beta values to separate file.
useBetas	logical indicating betas rather than standardized betas used.
transformMethod	string optional transform method.
numCores	numeric number of processor cores to use in mclapply
verbose	logical to send verbose messages to stdout.

Value

mainEffectValues vector of main effect values.

See Also

rankUnivariateRegression

Other GAIN functions: dcgain(), dmgain(), fitInteractionModel(), fitMainEffectModel(), gainToSimpleSIF(), getInteractionEffects(), regainParallel(), regain()

Other inbix synonym functions: dcgain(), regainParallel(), regain()

insilico/npdro documentation built on July 1, 2023, 2:56 p.m.