Files in ipb-halle/MetFamily
MetFamily: Discovering Regulated Metabolite Families in Untargeted Metabolomics Studies
.Rbuildignore
.github/workflows/build.yml
.gitignore
DESCRIPTION
Dockerfile
Dockerfile-base
Dockerfile-rstudio
IntMedDf.Rdata
LICENSE
MetFamily.Rproj
NAMESPACE
NEWS
R/Analysis.R
R/Annotation.R
R/Classifiers.R
R/DataProcessing.R
R/FragmentMatrixFunctions.R
R/Plots.R
R/R_packages.R
R/TreeAlgorithms.R
R/parsePeakAbundanceMatrixQF.R
R/readMSDial.R
R/readMetaboScape.R
R/runMetFamily.R
README.md
binder/install.R
binder/runtime.txt
inst/MetFamily/app_files/server_functionsDownloads.R
inst/MetFamily/app_files/server_functionsFilters.R
inst/MetFamily/app_files/server_functionsSelections.R
inst/MetFamily/app_files/server_functionsSerialization.R
inst/MetFamily/app_files/server_functionsTableGui.R
inst/MetFamily/app_files/server_guiAnnotation.R
inst/MetFamily/app_files/server_guiDialogs.R
inst/MetFamily/app_files/server_guiMs2plot.R
inst/MetFamily/app_files/server_guiPlotControls.R
inst/MetFamily/app_files/server_guiPlots.R
inst/MetFamily/app_files/server_guiTabAnnotation.R
inst/MetFamily/app_files/server_guiTabClassifier.R
inst/MetFamily/app_files/server_guiTabExport.R
inst/MetFamily/app_files/server_guiTabHca.R
inst/MetFamily/app_files/server_guiTabInput.R
inst/MetFamily/app_files/server_guiTabMsmsFilter.R
inst/MetFamily/app_files/server_guiTabPca.R
inst/MetFamily/app_files/server_guiTabSampleFilter.R
inst/MetFamily/app_files/server_guiTabSearch.R
inst/MetFamily/app_files/ui_rightColumn.R
inst/MetFamily/server.R
inst/MetFamily/tests/testthat.R
inst/MetFamily/tests/testthat/_snaps/linux-4.3/shinytest2/MetFamilyLoadExample-001.png
inst/MetFamily/tests/testthat/_snaps/linux-4.3/shinytest2/MetFamilyLoadExample-002.json
inst/MetFamily/tests/testthat/_snaps/linux-4.3/shinytest2/MetFamilyLoadExample-002_.png
inst/MetFamily/tests/testthat/setup-shinytest2.R
inst/MetFamily/tests/testthat/test-shinytest2.R
inst/MetFamily/ui.R
inst/MetFamily/version.R
inst/MetFamily/www/css/ipb-styles.css
inst/MetFamily/www/img/2013_IPB_Logo_EN.png
inst/MetFamily/www/img/2019_wch_logo_de_invertiert.png
inst/MetFamily/www/img/2020_Logo_schrift_weiss_Trans_EN.png
inst/MetFamily/www/img/Leibniz__Logo_EN_Negative_100mm.svg
inst/MetFamily/www/img/Metfamily.gif
inst/MetFamily/www/img/body-bg.png
inst/MetFamily/www/img/denbi-logo-white.svg
inst/MetFamily/www/ipbfooter.html
inst/MetFamily/www/logo_ipb_en.png
inst/extdata/classifier/README
inst/extdata/showcase/Fragment_matrix_showcase.csv
inst/extdata/showcase/MSMS_library_showcase.msp
inst/extdata/showcase/Metabolite_profile_showcase.txt
inst/extdata/showcase/Project_file_showcase_annotated.csv.gz
inst/extdata/showcase/Project_file_showcase_annotated_reduced.csv.gz
inst/extdata/showcase/Project_file_showcase_reduced.csv.gz
inst/extdata/testdata/MetaboScape_rye_data.xlsx
inst/extdata/testdata/canopus/HeightShort.txt
inst/extdata/testdata/canopus/MspShort.msp
inst/extdata/testdata/canopus/PrecursorMatrix_shortByModified.csv
inst/extdata/testdata/canopus/all_objectsInLoadExampleData.RData
inst/extdata/testdata/canopus/canopusShort.txt
inst/extdata/testdata/clusterDataList.Rdata
inst/extdata/testdata/filterObj.Rdata
inst/extdata/testdata/hcaFilter.Rdata
inst/extdata/testdata/parameterSet.RData
inst/extdata/testdata/processMS1data.Rdata
inst/extdata/testdata/readClusterDataFromProjectFile.Rdata
inst/extdata/testdata/readMSPreturnObj.Rdata
man/calcPlotDendrogram_plotly.Rd
man/calcPlotHeatmapLegend.Rd
man/castListEntries.Rd
man/data.numericmatrix.Rd
man/metaboliteFamilyVersusClass.Rd
man/mzClustGeneric.Rd
man/processMS1data.Rd
man/readClusterDataFromProjectFile.Rd
man/readProjectData.Rd
man/runMetFamily.Rd
medint.Rdata
supervisord-rstudio.conf
supervisord.conf
tests/testthat.R
tests/testthat/IntMedDf.Rdata
tests/testthat/test-readMSDial.R
tests/testthat/test-readMetaboScape.R
tests/testthat/test_dataprocessing.R
tests/testthat/test_fileinput.R
vignettes/biomed-central.csl
vignettes/discoveringregulatedmetabolitefamilies.Rmd
vignettes/references.bib
