edit_info: Function to edit info data frames.

In iramosgutierrez/randtip: A generalized framework to expand incomplete phylogenies with taxonomic information

Function to edit info data frames.

Description

Auxiliar function for smoothly editing the info data frame

Usage

edit_info(info, taxa, column = NULL, edit = NULL, remove.rows = FALSE)

Arguments

info	An info data frame.
taxa	Character vector with the taxa to be edited or removed.
column	The name of the column to be edited for the specified taxa. NULL is only accepted if remove.rows is TRUE.
edit	Any allowed value for the column to be edited. NULL is only accepted if remove.rows is TRUE.
remove.rows	If TRUE, the specified taxa will be removed from the info data frame (default is FALSE).

Value

An edited info data frame

Author(s)

Ignacio Ramos-Gutierrez, Rafael Molina-Venegas, Herlander Lima

Examples

 catspecies <- c("Lynx_lynx", "Panthera_uncia",
"Panthera_onca", "Felis_catus", "Puma_concolor",
"Lynx_canadensis", "Panthera_tigris", "Panthera_leo",
"Felis_silvestris")

cats.info <- build_info(species=catspecies, tree= cats,
     find.ranks=TRUE, db="ncbi", mode="backbone")

cats.info <- edit_info(cats.info, taxa= "Puma_concolor",
column = "subfamily", edit = "Felinae")

iramosgutierrez/randtip documentation built on March 19, 2024, 6:35 p.m.