edit_tree: Function to edit phylogenetic tip labels

In iramosgutierrez/randtip: A generalized framework to expand incomplete phylogenies with taxonomic information

Function to edit phylogenetic tip labels

Description

Auxiliar function for smoothly editing the tip labels of the backbone tree

Usage

edit_tree(tree, tips, edit = NULL, remove.tips = FALSE)

Arguments

tree	A backbone tree.
tips	Character vector with the phylogenetic tips to be edited or removed.
edit	A vector of the same length as tips with the new labels for the specified tips. NULL is only accepted if remove.tips is TRUE.
remove.tips	If TRUE, the specified tips will be pruned from the backbone tree (default is FALSE).

Value

An edited backbone tree.

Author(s)

Ignacio Ramos-Gutierrez, Rafael Molina-Venegas, Herlander Lima

Examples

cats <- edit_tree(cats, tips="Felis_silvestris",
edit= "Felis_silvestris_ssp._silvestris")

iramosgutierrez/randtip documentation built on March 19, 2024, 6:35 p.m.