Man pages for isaisg/ohchibi
ohchibi
| chibi.anova | Plots results from aov output |
| chibi.boxplot | Creates a boxplot ussing ggplot2 using variables in a... |
| chibi.cap | Plots results from oh.cap |
| chibi.comparecluster | Perform GO enrichment comparing clusters |
| chibi.ggcor | Plot a correlation matrix as a heatmap |
| chibi.heatmap | Plot a heatmap |
| chibi.pca | Plots results from oh.pca Uses the variables in the metadata... |
| chibi.pco | Plots results from oh.pco |
| chibi.permanova | Plots results from adonis output |
| chibi.phylogram | Plots a proportion barplot(phylogram) |
| chibi.sina | Creates a sina plot ussing ggplot2 using variables in a... |
| MAD | Performs MAD rooting of a phylogenetic tree |
| oh.cap | Performs Constrained Analysis of Principal Coordinates based... |
| oh.ggsave.svg | Saves a ggplot object in a publication ready high resolution... |
| oh.hotspot.byindex | Given a list of numbers (genomic indices) finds indices that... |
| oh.hotspot.finder | Takes a gff df read by oh.read.gff and a list of gene_oids... |
| oh.MAD | Wrapper for MAD function |
| oh.pca | Performs Principal Component Analysis based on prcomp command |
| oh.pco | Performs Principal Coordinate Analysis based on cmdscale... |
| oh.read.gff | Read a gff3 file (IMG Data) and converts into df Aditionally... |
| oh.save.pdf | Function to save objects in high resolution. To be used with... |
| oh.wrapper.hotspot.profiler | Wrapper that takes a gff dataframe, a dataframe with gene_ids... |
| theme_ohchibi | ggplo2 theme default for ohchibi plots |
