get_table-methods: Method to obtain a specific inner table from a 'CTDdata'...

In isglobal-brge/CTDquerier: Package for CTDbase data query, visualization and downstream analysis

Method to obtain a specific inner table from a CTDdata object.

Description

Obtain the raw data from a CTDdata object, result from a query to CTDbase.

Usage

get_table(object, index_name, ...)

Arguments

object	Object of class CTDdata.
index_name	String indicating the type of data to obtain.
...	NOT USED

Details

Available tables are (index_name):

1. "gene interactions": (Only for chemicals) Table with a relation of the genes interacting with the given chemicals.

2. "chemical interactions": (Only for genes) Table with a relation of the chemicals interacting with the given genes.

3. "diseases": Table with a relation of the diseases associated with given genes or chemicals.

4. "gene-gene interactions": (Only for genes) Table with a relation of the genes interacting with the given genes.

5. "kegg pathways": Table with a relation of the KEGG pathways affected by the given chemicals or where the given genes play a role.

6. "go terms": Table with a relation of the GO terms affected by the given chemicals or where the given genes play a role.

Value

A DataFrame containing the raw result from CTDdata.

Examples

data("gala")
get_table(gala, "diseases")[1:3, ]

isglobal-brge/CTDquerier documentation built on Oct. 6, 2022, 1:18 p.m.