UCSC_regulation: UCSC annotation

View source: R/epi_plot.R

UCSC_regulationR Documentation

UCSC annotation

Description

UCSC annotations for CpG Islands, H3K27Ac and H3K4Me3 for a given genome assembly and genomic coordinates.

Usage

UCSC_regulation(genome, chr, from, to)

Arguments

genome

genome asambly. Can be set as: 'hg38', 'hg19' and 'hg18'.

chr

a character string containing the sequence names to be analysed.

from, to

scalar, specifying the range of genomic coordinates. Note that from cannot be larger than to.

Value

UCSC_regulation returns a list containing CpG Islands, H3K27Ac and H3K4Me3 tacks.


isglobal-brge/epimutacions documentation built on April 22, 2024, 4:08 a.m.