references: 'references' data

In isglobal-brge/methylclockData: Data for methylclock package

Description

The methylclockData package is a repository of a few public datasets that needs the *methylclock* package to estimate chronological and gestational DNA methylation (DNAm) age as well as biological age using different methylation clocks.

Usage

data("references")

Format

A list with different data frame.

blood gse35069 complete

methylation profiles from @reinius2012differential for purified blood cell types. It includes CD4T, CD8T, Mono,

blood gse35069

methylation profiles from @reinius2012differential for purified blood cell types. It includes CD4T,CD8T, Mono, Bcell, NK and Gran.

blood gse35069 chen

methylation profiles from @chen2017epigenome blood cell types. It includes CD4T, CD8T, Mono, Bcell, NK, Neu and Eos.

andrews and bakulski cord blood

Cord blood reference from @bakulski2016dna. It includes Bcell, CD4T, CD8T, Gran, Mono, NK and nRBC.

cord blood gse68456

Cord blood methylation profiles from @de2015nucleated. It includes CD4T, CD8T, Mono, Bcell, NK, Neu, Eos and RBC.

gervin and lyle cord blood

Cord blood reference generated by Kristina Gervin and Robert Lyle, available at 'miffil' package. It includes CD14, Bcell, CD4T, CD8T, NK, Gran.

saliva gse48472

Reference generated from the multi-tissue pannel from @slieker2013identification. It includes Buccal, CD4T, CD8T, Mono, Bcell, NK, Gran.

Examples

data(references)
## maybe str(references) ; plot(references) ...

isglobal-brge/methylclockData documentation built on June 7, 2021, 8:23 p.m.