Man pages for ismaRP/MALDIpqi
Estimate Parchment Glutamine Index from MALDI-TOF datasets
| calc_n_frac_peaks | Title |
| deamidation_coeffs | Calculate the coefficients of each of the non or deamidated... |
| extract_estimates | Title |
| fvsr | Fitted versus residuals plot per peptide |
| get_isodists | Get isotopic distributions |
| isotopic_deam | Calculate the isotopic envelope of a deamidated peptide |
| isotopic_deam_df | Isotopic distribution of deamidated peptdes It produces the... |
| isotopic_deam_mat | Isotopic distribution of deamidated peptides It produces the... |
| lme_pqi | Calculate PQI using linear mixed effect model from q2e... |
| lm_q2e | Fit a linear model without weights and forcing a 0 intercept |
| lm_q2e_intercept | Fit a linear model using weights and intercept |
| lm_q2e_oneshot | Estimation of peptide q2e in a single linear regression with... |
| normalize_intensity | Normalize vector of intensities by the maximum |
| peptide_labeller | Labeler helper for plotting peptide spectra Title |
| pept_qqplot | Quantile-Quantile plots of the linear mixed effect estimates... |
| plot_n_peaks_per_peptide | Title |
| plot_preprocessing | Title |
| predict_pqi | Title |
| predict_sample | Title |
| prepare_peaks | Prepare list of peaks data into a data.frame |
| preprocess_spectra | Preprocessing spectra for q2e estimation |
| print_progress | Print only if verbose |
| wlm_q2e | Fit a linear model with weights and forcing a 0 intercept |
| wlm_q2e_intercept | Fit a linear model using weights and intercept |
