pept_qqplot: Quantile-Quantile plots of the linear mixed effect estimates...

In ismaRP/MALDIpqi: Estimate Parchment Glutamine Index from MALDI-TOF datasets

Quantile-Quantile plots of the linear mixed effect estimates per peptide

Description

Quantile-Quantile plots of the linear mixed effect estimates per peptide

Usage

pept_qqplot(
  pqi_m,
  title = "",
  peptides_user = NULL,
  label_idx = 2,
  label_func = label_value
)

Arguments

pqi_m	data.frame of model estimates per replicate and peptide
title	Plot title
peptides_user	A dataframe with peptide information. It must contain at least 3 columns, peptide number or ID, name, and m/z. If NULL, default peptides are used. The number or ID must have the form Pep# and be in the first column. See getIsoPeaks details.
label_idx	Index where to pull the labels from peptides
label_func	labeller function to process labels. See labeller Default is label_value.

ismaRP/MALDIpqi documentation built on July 2, 2024, 8:43 p.m.