bdg_norm_lmx: bdg_norm_lmx (Reference sample based normalization)

In ismms-himc/LuminexTools:

bdg_norm_lmx (Reference sample based normalization)

Description

normalize by adjust samples' value per plate to make that the reference sample among all plates are the same. option to pick using median, max, mean

Usage

bdg_norm_lmx(
  bridge.ls,
  data.ls,
  between.plate.method = "max",
  round_digits = 3,
  from_assay = "default",
  save_assay = "normed"
)

Arguments

bridge.ls	list of bridge.summarizedexperiment objs using pull_bdg()
data.ls	list of summarizedexperiment objs using read_npx(). normalized assay slot will be added to each of the object in the list.
between.plate.method	method to set the inter plate reference value of bridging samples using max can garantee no negative value of the normalized data
round_digits	digit kept
from_assay	select assay slot to be normalized
save_assay	name the assay slot for normalized data

ismms-himc/LuminexTools documentation built on July 2, 2024, 2:08 a.m.