bdg_norm_lmx_multi: bdg_norm_lmx_multi (Reference sample based normalization)

In ismms-himc/LuminexTools:

bdg_norm_lmx_multi (Reference sample based normalization)

Description

normalize by adjust samples' value per plate to make that the reference sample among all plates are the same. option to pick using median, max, mean

Usage

bdg_norm_lmx_multi(
  bridge.str,
  data.ls,
  round_digits = 3,
  between.plate.method = "mean",
  from.assay = "default",
  save_assay = "normed"
)

Arguments

bridge.str	vector of common strings to identify sets of bridging samples
data.ls	list of summarizedexperiment objs using read_npx(). normalized assay slot will be added to each of the object in the list.
round_digits	digit kept
save_assay	name the assay slot for normalized data
from_assay	select assay slot to be normalized

ismms-himc/LuminexTools documentation built on July 2, 2024, 2:08 a.m.