tot.fit.spill <- rpart(transOutcome ~ modelVar + coord1 + coord2 +trans_dist,
data = trans_dta@data,
control=rpart.control(cp=0, minsplit=tree_split_lim),
method="anova")
cpbest <- tot.fit.spill$cptable[which.min(tot.fit.spill$cptable[,"xerror"]),"CP"]
tot.fit.spillB <- rpart(transOutcome ~ modelVar + coord1 + coord2,
data = trans_dta@data,
control=rpart.control(cp=cpbest, minsplit=tree_split_lim),
method="anova")
spdf@data["coord1"] <- coordinates(spdf)[,1]
spdf@data["coord2"] <- coordinates(spdf)[,2]
res <- predict(tot.fit.spillB, newdata=spdf@data)
# Add by Jianing
db = spdf@data
tree2 = tot.fit.spillB
tree2$frame$yval = as.numeric(rownames(tree2$frame))
res2 = predict(tree2,newdata=spdf@data)
leaf = unique(tot.fit.spillB$where)
res3 = 0
for(i in 1:length(leaf)){
treatcount = 0
untreatcount = 0
count = 0
temp = 0
for(j in 1:nrow(db)){
if(res2[j] == leaf[i]){
temp = c(temp,j)
count = count + 1
if(db$treatment.status[j] == 1){
treatcount = treatcount + 1
}
if(db$treatment.status[j] == 0){
untreatcount = untreatcount + 1
}
}
}
if(count == treatcount | count == untreatcount ){
temp = temp[-1]
res3 = c(res3,temp)
}
}
res_leaf2prune = res3[-1]
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