normalise_patterson: Perform the Patterson et al. (2006) normalisation to a...
In j-a-thia/genomalicious: A smorgasbord of R functions for population genomic analyses
View source: R/normalise_patterson.R
normalise_patterson R Documentation
Perform the Patterson et al. (2006) normalisation to a genotype matrix
Description
Perform the Patterson et al. (2006) normalisation to a genotype matrix
Usage
normalise_patterson(dat)
Arguments
dat
Matrix: Counts of Alt allele per individual (0, 1, or 2)
, e.g. the C(i,j) table described in Patterson et al. (2006).
Value
Returns a matrix with the same dimensions as dat, but with
genotypes normalised as per Patterson et al. (2006).
References
Patterson et al. (2006) Population structure and eigenanalysis. PLOS Genetics.
j-a-thia/genomalicious documentation built on Oct. 19, 2024, 7:51 p.m.
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View source: R/normalise_patterson.R
| normalise_patterson | R Documentation |
Perform the Patterson et al. (2006) normalisation to a genotype matrix
Description
Perform the Patterson et al. (2006) normalisation to a genotype matrix
Usage
normalise_patterson(dat)
Arguments
dat |
Matrix: Counts of Alt allele per individual (0, 1, or 2) , e.g. the C(i,j) table described in Patterson et al. (2006). |
Value
Returns a matrix with the same dimensions as dat, but with
genotypes normalised as per Patterson et al. (2006).
References
Patterson et al. (2006) Population structure and eigenanalysis. PLOS Genetics.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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