CreateOutputStructure: Create output directory structure

In j-andrews7/AndrewsBCellLymphoma: One-liner RNA-seq and ChIP-seq Analyses

Description

CreateRNAOutputStructure generates the output directories used by RunDESeq2, ProcessDEGs, RunDiffBind, and ProcessDBRs.

Usage

CreateOutputStructure(block, level, base, chip = FALSE)

Arguments

block	String or character vector defining the variable(s) to use to block for unwanted variance, e.g. batch or technical effects.
level	String defining variable of interest.
base	String defining the base output path.
chip	Boolean indicating whether output is being created for ChIP-seq.

Value

A named List containing the modified base output path and design formula.

Author(s)

Jared Andrews

j-andrews7/AndrewsBCellLymphoma documentation built on Sept. 9, 2021, 11 a.m.