PlotRNAEDAPCAs: Plot PCAs from variance stabilized counts for EDA

In j-andrews7/AndrewsBCellLymphoma: One-liner RNA-seq and ChIP-seq Analyses

Description

Plot PCAs from variance stabilized counts for EDA

Usage

PlotRNAEDAPCAs(rld, vsd, outpath, level, plot.annos)

Arguments

rld	A RangedSummarizedExperiment object of rlog transformed counts as returned by PlotRNAVarianceTransformations.
vsd	A RangedSummarizedExperiment object of vst transformed counts as returned by PlotRNAVarianceTransformations.
outpath	Path to output file.
level	String defining variable of interest.
plot.annos	String or character vector defining the column(s) in samplesheet to use to annotate figures.

Author(s)

Jared Andrews

j-andrews7/AndrewsBCellLymphoma documentation built on Sept. 9, 2021, 11 a.m.