SSdiagsMCMC: SSdiagsMCMC()

In jabbamodel/ss3diags: What the Package Does (One Line, Title Case)

SSdiagsMCMC()

Description

function to read mcmc file outputs for Kobe and SSplotEnsemble() plotting

Usage

SSdiagsMCMC(
  mcmc,
  ss3rep,
  Fref = NULL,
  years = NULL,
  run = "MCMC",
  thin = 1,
  plot = TRUE,
  addprj = FALSE,
  ymax = NULL,
  xmax = NULL,
  legendcex = 1,
  verbose = TRUE
)

Arguments

mcmc	file path for folder with the derived_posteriors.sso file
ss3rep	from r4ss::SS_output
Fref	Choice of Fratio c("MSY","Btgt), correponding to F_MSY and F_Btgt
years	single year or vector of years for mvln
run	qualifier for model run
thin	option to use additional thinning
plot	option to show plot
addprj	include forecast years
ymax	ylim maximum
xmax	xlim maximum
verbose	Report progress to R GUI?
legendcex=1	Allows to adjust legend cex

Value

output list of quant mcmc posteriors and mle's

Author(s)

Henning Winker (JRC-EC), Massimiliano and Laurence Kell (Sea++)

jabbamodel/ss3diags documentation built on Oct. 8, 2024, 11:49 p.m.