plot_dimred: UMAP or tSNE showing cell clusters

In jackbibby1/scExpression: Plot single cell expression data

Description

Use this to plot data as a UMAP or tSNE

Usage

plot_dimred(dataset, reduction = "umap", add_cell_label = F, avoid_overlap = T)

Arguments

dataset	Seurat object that you want to get expression from
reduction	Do you want to use UMAP or tSNE?
add_cell_label	Should cell names be added to UMAP as well as legend
avoid_overlap	Force cell names to avoid overalpping on UMAP

Examples

## Not run: 
plot_dimred(dataset = seurat_object,
            add_cell_label = T)

## End(Not run)

jackbibby1/scExpression documentation built on Dec. 20, 2021, 8:05 p.m.