Files in jackwasey/icd
Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes

.Rbuildignore
.Rinstignore
.aspell/defaults.R
.aspell/icdwords.rds
.aspell/words.pws
.covrignore
.gitattributes
.gitignore
.lintr
.travis.yml
CONTRIBUTING.md
COPYING
DESCRIPTION
NAMESPACE
NEWS.md R/RcppExports.R R/as_char_no_warn.R R/attr.R R/categorize.R R/children.R R/class.R R/comorbid.R R/comorbid_pccc.R R/condense.R R/convert.R R/datadocs.R R/diff_comorbid.R R/env.R R/explain-table.R R/explain.R R/factor_nosort.R R/filter.R R/generate_mappings.R R/generate_pccc.R R/generate_spelling.R R/generate_sysdata.R R/guess.R R/hcc.R R/icd-package.R R/icd.data-1.0-compat.R R/manip.R R/parse-ahrq-ccs.R R/parse-ahrq-pcs.R R/parse-comorbid.R R/parse_hcc.R R/plot.R R/print.icd_comorbidity_map.R R/ranges.R R/real.R R/sas.R R/save_in_data_dir.R R/score.R R/sort.R
R/sysdata.rda
R/to_data_raw.R R/unzip_single.R R/util-test.R R/util.R R/valid.R R/zzz.R README.Rmd README.md
_config.yml
appveyor.yml
benchmarks/bench-addleadingzeroes.R benchmarks/bench-appendMinor.R benchmarks/bench-charlson.R benchmarks/bench-children.R benchmarks/bench-class.R benchmarks/bench-comorbid-icd9-1e7-plain.R benchmarks/bench-dropLeadingZeroes.R benchmarks/bench-expand.R benchmarks/bench-factor-nosort.R benchmarks/bench-gen-hier.R benchmarks/bench-parse-rtf-lookup-fourth.R benchmarks/bench-parse-rtf.R benchmarks/bench-pccc.R benchmarks/bench-rbind-with-empty.R benchmarks/bench-rtf.R benchmarks/bench-strings.R benchmarks/bench-versus-compare.R benchmarks/bench-versus-plus.R benchmarks/benchmark.R
benchmarks/icd-JSS3447-replication/.gitignore
benchmarks/icd-JSS3447-replication/Dockerfile
benchmarks/icd-JSS3447-replication/Makefile
benchmarks/icd-JSS3447-replication/README-replication.Rmd benchmarks/icd-JSS3447-replication/bench-versus.R
benchmarks/icd-JSS3447-replication/comorbidity_0.1.1.tar.gz
benchmarks/icd-JSS3447-replication/find_comobidity_cutoff.R benchmarks/icd-JSS3447-replication/install-dependencies.R
benchmarks/icd-JSS3447-replication/medicalrisk_1.2.tar.gz
benchmarks/lookup-fourth.rda
benchmarks/rtf-fourth-out.rda
codecov.yml
codemeta.json
cran-comments.md
data-raw/.gitignore
data-raw/ICD10_Charlson.sas
data-raw/ICD10_Elixhauser.sas
data-raw/ICD9_E_Charlson.sas
data-raw/ICD9_E_Elixhauser.sas
data-raw/X.dxref.2015.csv
data-raw/ccs_multi_dx_tool_2013.csv
data-raw/ccs_multi_dx_tool_2015.csv
data-raw/ccs_multi_pr_tool_2014.csv
data-raw/comformat2012-2013.txt
data-raw/comformat_icd10cm_2016.txt
data-raw/comoanaly2012-2013.txt
data-raw/icd_hcc_rawdata/hierarchy/2007_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2008_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2009_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2010_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2011_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2012_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2013_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2014_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2015_hierarchy.txt
data-raw/icd_hcc_rawdata/hierarchy/2016_hierarchy.txt
data-raw/icd_hcc_rawdata/icd10/2016_icd10hcc.txt
data-raw/icd_hcc_rawdata/icd9/2007_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2008_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2009_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2010_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2011_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2012_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2013_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2014_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2015_icd9hcc.txt
data-raw/icd_hcc_rawdata/icd9/2016_icd9hcc.txt
data-raw/icd_hcc_rawdata/labels/2007_labels.txt
data-raw/icd_hcc_rawdata/labels/2008_labels.txt
data-raw/icd_hcc_rawdata/labels/2009_labels.txt
data-raw/icd_hcc_rawdata/labels/2010_labels.txt
data-raw/icd_hcc_rawdata/labels/2011_labels.txt
data-raw/icd_hcc_rawdata/labels/2012_labels.txt
data-raw/icd_hcc_rawdata/labels/2013_labels.txt
data-raw/icd_hcc_rawdata/labels/2014_labels.txt
data-raw/icd_hcc_rawdata/labels/2015_labels.txt
data-raw/icd_hcc_rawdata/labels/2016_labels.txt
data/icd10_map_ahrq.RData
data/icd10_map_ahrq_pcs.RData
data/icd10_map_cc.RData
data/icd10_map_ccs.RData
data/icd10_map_charlson.RData
data/icd10_map_elix.RData
data/icd10_map_pccc_dx.RData
data/icd10_map_pccc_pcs.RData
data/icd10_map_quan_deyo.RData
data/icd10_map_quan_elix.RData
data/icd10_names_ccs.RData
data/icd9_map_ahrq.RData
data/icd9_map_cc.RData
data/icd9_map_charlson.RData
data/icd9_map_elix.RData
data/icd9_map_multi_ccs.RData
data/icd9_map_pccc_dx.RData
data/icd9_map_pccc_pcs.RData
data/icd9_map_quan_deyo.RData
data/icd9_map_quan_elix.RData
data/icd9_map_single_ccs.RData
data/icd9_names_multi_ccs.RData
data/icd9_names_single_ccs.RData
data/icd_map_cc_hcc.RData
data/mappingNames.R
icd.Rproj
inst/COPYING
inst/COPYRIGHTS
inst/WORDLIST
inst/_pkgdown.yml
man-roxygen/abbrev_names.R man-roxygen/billable.R man-roxygen/ccs-single.R man-roxygen/defined.R man-roxygen/deprecated-icd3.R man-roxygen/dotdotdot.R man-roxygen/hierarchy.R man-roxygen/icd9-any.R man-roxygen/icd9-decimal.R man-roxygen/icd9-short.R man-roxygen/icd9df.R man-roxygen/icd_name.R man-roxygen/invert.R man-roxygen/isShort.R man-roxygen/leadingZeroes.R man-roxygen/mapping-icd9.R man-roxygen/mapping.R man-roxygen/mjr.R man-roxygen/mnr.R man-roxygen/offline.R man-roxygen/onlyBillable.R man-roxygen/parse-template.R man-roxygen/poa.R man-roxygen/poaField.R man-roxygen/poa_name.R man-roxygen/return.df.R man-roxygen/return_binary.R man-roxygen/return_df.R man-roxygen/save_data.R man-roxygen/scoring-system.R man-roxygen/sep.R man-roxygen/short_code.R man-roxygen/short_map.R man-roxygen/stringsAsFactors.R man-roxygen/toParent.R man-roxygen/verbose.R man-roxygen/visitId.R man-roxygen/visit_name.R man-roxygen/warn.R man-roxygen/whitespace_ok.R man-roxygen/widevlong.R man/apply_hier.Rd man/as.comorbidity_map.Rd man/as.decimal_diag.Rd man/attr_decimal_diag.Rd man/attr_short_diag.Rd man/chapters_to_map.Rd man/charlson.Rd man/charlson_from_comorbid.Rd man/children.Rd man/combine.Rd man/comorbid.Rd man/comorbid_df_to_mat.Rd man/comorbid_hcc.Rd man/comorbid_mat_to_df.Rd man/comorbid_pccc_dx.Rd man/condense.Rd man/convert.Rd man/count_codes.Rd man/count_codes_wide.Rd man/count_comorbid.Rd man/cr.Rd man/decimal_to_short.Rd man/diff_comorbid.Rd man/expand_range.Rd man/expand_range.icd10cm.Rd man/expand_range_major.Rd man/explain_code.Rd man/explain_table.Rd man/explain_table_worker.Rd man/factor_is_valid.Rd
man/figures/README-example-1.png
man/filter_poa.Rd man/filter_valid.Rd man/generate_neds_pts.Rd man/get_billable.Rd man/get_defined.Rd man/get_invalid.Rd man/get_leaf.Rd man/get_valid.Rd man/guess_short.Rd man/guess_version.Rd man/icd-package.Rd man/icd10_comorbid_reduce.Rd man/icd10_map_ahrq_pcs.Rd man/icd9MajMinToCode.Rd man/icd9_map_ahrq.Rd man/icd9_map_elix.Rd man/icd9_map_hcc.Rd man/icd9_map_pccc.Rd man/icd9_map_quan_deyo.Rd man/icd9_map_quan_elix.Rd man/icd9_map_single_ccs.Rd man/is.icd9.Rd man/is.icd_long_data.Rd man/is_billable.Rd man/is_defined.Rd man/is_leaf.Rd man/is_valid.Rd man/is_valid_major.Rd man/long_to_wide.Rd man/names_elix.Rd man/plot_comorbid.Rd man/poa_choices.Rd man/print.comorbidity_map.Rd man/print.icd9.Rd man/refactor_worker.Rd man/set_icd_class.Rd man/short_to_decimal.Rd man/shortcode_icd9.Rd man/sort_icd.Rd man/sub-sub-.comorbidity_map.Rd man/subset.Rd man/van_walraven.Rd man/wide_to_long.Rd man/wide_vs_long.Rd
src/.clang-format
src/.gitignore
src/Makevars
src/Makevars.win
src/Makevars.win64
src/RcppExports.cpp
src/appendMinor.cpp
src/appendMinor.h
src/attr.cpp
src/attr.h
src/categorize.cpp
src/children.cpp
src/comorbidIcd10.cpp
src/comorbidMatMul.cpp
src/comorbidMatMul.h
src/convert.cpp
src/convert.h
src/convert10.cpp
src/convert10.h
src/cutil.c
src/cutil.h
src/fastIntToString.cpp
src/fastIntToString.h
src/guess.cpp
src/icd_types.h
src/is.cpp
src/is.h
src/local.h
src/manip.cpp
src/manip.h
src/mapplus.cpp
src/mapplus.h
src/range-const.h
src/ranges.cpp
src/ranges.h
src/refactor.cpp
src/refactor.h
src/relevant.cpp
src/relevant.h
src/test-cpp-matmul.cpp
src/test-cpp.cpp
src/test-runner.cpp
src/util.cpp
src/util.h
src/valgrind_icd.cpp
src/valgrind_icd.h
tests/test-all.R
tests/testthat/github133-b.rds
tests/testthat/github133_tiny_slice.txt
tests/testthat/helper-base.R tests/testthat/helper-icd10.R tests/testthat/test-attr.R tests/testthat/test-billable.R tests/testthat/test-build-maps-icd10.R tests/testthat/test-build-maps-icd9.R tests/testthat/test-build-sysdata.R tests/testthat/test-categorize.R tests/testthat/test-ccs-calcs.R tests/testthat/test-chapters-to-map.R tests/testthat/test-children-icd10.R tests/testthat/test-class.R tests/testthat/test-comorbid-calcs-icd10.R tests/testthat/test-comorbid-calcs-icd9.R tests/testthat/test-comorbid-maps-icd10.R tests/testthat/test-comorbid-maps-icd9.R tests/testthat/test-comorbid-wide.R tests/testthat/test-condense.R tests/testthat/test-convert.R tests/testthat/test-examples.R tests/testthat/test-explain-fr.R tests/testthat/test-explain-icd10.R tests/testthat/test-explain-table.R tests/testthat/test-explain-who.R tests/testthat/test-explain.R tests/testthat/test-factor.R tests/testthat/test-filter-icd10.R tests/testthat/test-filter-poa.R tests/testthat/test-github133.R tests/testthat/test-guess.R tests/testthat/test-hcc.R tests/testthat/test-is.R tests/testthat/test-longtowide.R tests/testthat/test-manip.R tests/testthat/test-pccc.R tests/testthat/test-ranges-icd10.R tests/testthat/test-ranges.R tests/testthat/test-refactor-slow.R tests/testthat/test-refactor.R tests/testthat/test-reshape.R tests/testthat/test-sas.R tests/testthat/test-score.R tests/testthat/test-sort.R tests/testthat/test-spell.R tests/testthat/test-util.R tests/testthat/test-valid-icd10.R tests/testthat/test-valid.R
tools/Rcallgrind
tools/bibfix.sh
tools/build.sh
tools/check_cran.sh
tools/check_full.sh
tools/check_plus.sh
tools/check_plus_jit.sh
tools/check_quick.sh
tools/check_valgrind.sh
tools/check_vquick.sh
tools/clang-static-code-analyze.sh
tools/compare datasets.R tools/crash-cases/eigen.R tools/crash-cases/icd10.R tools/crash-cases/reduce-icd10.R tools/find_icd10cm_permutations.r
tools/format.sh
tools/gdb_fun.sh
tools/install_full.sh
tools/install_quick.sh
tools/m4/ax_check_compile_flag.m4
tools/publish.sh
tools/reversedep.R
tools/rprof-one-cmd.sh
tools/scan-build.sh
tools/stripRTF.py
tools/test-cpp.sh
tools/tidy.sh
tools/valgrind/valgrind-check.sh
tools/valgrind/valgrind-cmd.sh
tools/valgrind/valgrind-eigen-crash.sh
tools/valgrind/valgrind-misc.sh
tools/valgrind/valgrind-off.sh
tools/valgrind/valgrind-on.sh
tools/valgrind/valgrind-run.sh
tools/valgrind/valgrind-test-filter.sh
vignettes/.gitignore
vignettes/CMS-HCC.Rmd vignettes/ICD-10.Rmd vignettes/PCCC.Rmd vignettes/charlson-scores.Rmd vignettes/compare-maps.Rmd vignettes/country-lang-vers.Rmd vignettes/custom-maps.Rmd vignettes/efficiency.Rmd
vignettes/gplv3.bib
vignettes/icdjss.bib
vignettes/icdpkg.bib
vignettes/introduction.Rmd
vignettes/jss.bst
vignettes/jss.cls
vignettes/jsslogo.jpg
vignettes/other.bib
vignettes/ranges.Rmd
jackwasey/icd documentation built on April 2, 2019, 5:18 p.m.