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Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes

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.aspell/defaults.R

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.covrignore

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.github/workflows/codeql-analysis.yml

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CONTRIBUTING.md

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DESCRIPTION

NAMESPACE

NEWS.md R/R_user_dir.R R/RcppExports.R R/as_char_no_warn.R R/assign.R R/attr.R R/bindings.R R/categorize.R R/chapter-ranges.R R/children.R R/cim-10-fr.R R/class.R R/comorbid.R R/comorbid_pccc.R R/condense.R R/convert.R R/datadocs.R R/diff_comorbid.R R/env.R R/explain-table.R R/explain.R R/factor_nosort.R R/fetch_icd10cm.R R/filter.R R/generate.R R/generate_mappings.R R/generate_pccc.R R/generate_spelling.R R/guess.R R/hcc.R R/icd-cm-sources.R R/icd-cm-ver.R R/icd-package.R R/icd10be.R R/manip.R R/mapdocs.R R/options.R R/parse-ahrq-ccs.R R/parse-comorbid.R R/parse-icd10-pc.R R/parse-icd10.R R/parse-icd10cm-xml.R R/parse-rtf.R R/parse.R R/parse_hcc.R R/plot.R R/print.icd_comorbidity_map.R R/ranges.R R/real.R R/resource.R R/sas.R R/score.R R/sort.R

R/sysdata.rda

R/to_data_raw.R R/update.R R/uranium_pathology.R R/util-file.R R/util-icd-data.R R/util-str.R R/util-test.R R/util.R R/valid.R R/vermont_dx.R R/who.R R/zzz.R README.Rmd README.md

_config.yml

appveyor.yml

benchmarks/bench-addleadingzeroes.R benchmarks/bench-appendMinor.R benchmarks/bench-charlson.R benchmarks/bench-children.R benchmarks/bench-class.R benchmarks/bench-comorbid-icd9-1e7-plain.R benchmarks/bench-dropLeadingZeroes.R benchmarks/bench-expand.R

benchmarks/bench-fill-integer-seq-duff.cpp

benchmarks/bench-gen-hier.R benchmarks/bench-parse-rtf-lookup-fourth.R benchmarks/bench-parse-rtf.R benchmarks/bench-pccc.R benchmarks/bench-rbind-with-empty.R benchmarks/bench-refactor.Rmd benchmarks/bench-rtf.R benchmarks/bench-strings.R benchmarks/bench-versus-compare.R benchmarks/bench-versus-plus.R benchmarks/benchmark.R

benchmarks/icd-JSS3447-replication/.gitignore

benchmarks/icd-JSS3447-replication/Dockerfile

benchmarks/icd-JSS3447-replication/Makefile

benchmarks/icd-JSS3447-replication/README-replication.Rmd benchmarks/icd-JSS3447-replication/bench-versus.R

benchmarks/icd-JSS3447-replication/comorbidity_0.1.1.tar.gz

benchmarks/icd-JSS3447-replication/find_comobidity_cutoff.R benchmarks/icd-JSS3447-replication/install-dependencies.R

benchmarks/icd-JSS3447-replication/medicalrisk_1.2.tar.gz

benchmarks/lookup-fourth.rda

benchmarks/rtf-fourth-out.rda

cleanup

codecov.yml

codemeta.json

configure

configure.ac

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cran-comments.md

data-raw/.gitignore

data-raw/ICD10_Charlson.sas

data-raw/ICD10_Elixhauser.sas

data-raw/ICD9_E_Charlson.sas

data-raw/ICD9_E_Elixhauser.sas

data-raw/X.dxref.2015.csv

data-raw/ccs_multi_dx_tool_2013.csv

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data-raw/ver2016_ahrq-comformat_icd10cm_2016.txt

data/chapters.R

data/icd10_map_ahrq.rda

data/icd10_map_ahrq_pcs.rda

data/icd10_map_cc.rda

data/icd10_map_ccs.rda

data/icd10_map_charlson.rda

data/icd10_map_elix.rda

data/icd10_map_pccc_dx.rda

data/icd10_map_pccc_pcs.rda

data/icd10_map_quan_deyo.rda

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data/icd10_names_ccs.rda

data/icd10_sub_chapters.rda

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data/icd9_map_charlson.rda

data/icd9_map_elix.rda

data/icd9_map_multi_ccs.rda

data/icd9_map_pccc_dx.rda

data/icd9_map_pccc_pcs.rda

data/icd9_map_quan_deyo.rda

data/icd9_map_quan_elix.rda

data/icd9_map_single_ccs.rda

data/icd9_names_multi_ccs.rda

data/icd9_names_single_ccs.rda

data/icd9_sub_chapters.R

data/icd9cm2014_leaf.rda

data/icd9cm_hierarchy.rda

data/icd_map_cc_hcc.rda

data/mappingNames.R

data/uranium_pathology.rda

data/vermont_dx.rda

icd.Rproj

inst/COPYING

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inst/m4/openmp.m4

man-roxygen/abbrev_names.R man-roxygen/billable.R man-roxygen/ccs-single.R man-roxygen/defined.R man-roxygen/deprecated-icd3.R man-roxygen/dotdotdot.R man-roxygen/dx.R man-roxygen/hierarchy.R man-roxygen/icd9-any.R man-roxygen/icd9-decimal.R man-roxygen/icd9-short.R man-roxygen/icd9df.R man-roxygen/icd_name.R man-roxygen/invert.R man-roxygen/isShort.R man-roxygen/lang.R man-roxygen/leadingZeroes.R man-roxygen/mapping-icd9.R man-roxygen/mapping.R man-roxygen/mjr.R man-roxygen/mnr.R man-roxygen/offline.R man-roxygen/onlyBillable.R man-roxygen/parse-template.R man-roxygen/pc.R man-roxygen/poa.R man-roxygen/poaField.R man-roxygen/poa_name.R man-roxygen/return.df.R man-roxygen/return_binary.R man-roxygen/return_df.R man-roxygen/save_pkg_data.R man-roxygen/scoring-system.R man-roxygen/sep.R man-roxygen/short_code.R man-roxygen/short_map.R man-roxygen/stringsAsFactors.R man-roxygen/toParent.R man-roxygen/ver.R man-roxygen/verbose.R man-roxygen/visitId.R man-roxygen/visit_name.R man-roxygen/warn.R man-roxygen/whitespace_ok.R man-roxygen/widevlong.R man/apply_hier.Rd man/as.comorbidity_map.Rd man/as.decimal_diag.Rd man/attr_decimal_diag.Rd man/attr_short_diag.Rd man/categorize_simple.Rd man/chapters_to_map.Rd man/charlson.Rd man/charlson_from_comorbid.Rd man/children.Rd man/combine.Rd man/comorbid.Rd man/comorbid_df_to_mat.Rd man/comorbid_hcc.Rd man/comorbid_mat_to_df.Rd man/condense.Rd man/convert.Rd man/count_codes.Rd man/count_codes_wide.Rd man/count_comorbid.Rd man/cr.Rd man/decimal_to_short.Rd man/diff_comorbid.Rd man/download_all_icd_data.Rd man/expand_range.Rd man/expand_range.icd10cm.Rd man/expand_range_major.Rd man/explain_code.Rd man/explain_table.Rd man/explain_table_worker.Rd

man/figures/README-example-1.png

src/.clang-format

src/.clang-tidy

src/.gitignore

src/Makevars.in

src/Makevars.win

src/RcppExports.cpp

src/appendMinor.cpp

src/appendMinor.hpp

src/attr.cpp

src/attr.hpp

src/categorize.cpp

src/children.cpp

src/comorbidIcd10.cpp

src/comorbidMatMul.cpp

src/comorbidMatMul.hpp

src/convert.cpp

src/convert.hpp

src/convert10.cpp

src/convert10.hpp

src/cutil.c

src/cutil.h

src/fastIntToString.cpp

src/fastIntToString.hpp

src/guess.cpp

src/icd_types.hpp

src/is.cpp

src/is.hpp

src/local.hpp

src/makevars.h.win

src/makevars.h.win64

src/makevars.hpp

src/manip.cpp

src/manip.hpp

src/mapplus.cpp

src/mapplus.hpp

src/range-const.hpp

src/ranges.cpp

src/ranges.hpp

src/refactor.cpp

src/refactor.hpp

src/relevant.cpp

src/relevant.hpp

src/sort.cpp

src/sort.hpp

src/test-cpp-matmul.cpp

src/test-cpp.cpp

src/test-runner.cpp

src/util.cpp

src/util.hpp

tests/testthat.R

tests/testthat/github133-b.rds

tests/testthat/github133_tiny_slice.txt

tools/DESCRIPTION-minimalize.sh

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tools/find-icd-home.sh

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vignettes/.gitignore

vignettes/CMS-HCC.Rmd vignettes/ICD-10.Rmd vignettes/PCCC.Rmd vignettes/charlson-scores.Rmd vignettes/compare-maps.Rmd vignettes/country-lang-vers-prebuilt.Rmd vignettes/country-lang-vers-prebuilt.pdf

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vignettes/efficiency.Rnw

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vignettes/icd.bib

vignettes/icdjss.bib

vignettes/icdpkg.bib

vignettes/introduction.Rmd

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vignettes/jss.cls

vignettes/jsslogo.jpg

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jackwasey/icd
Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes

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Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes

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Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes

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