Files in jackwasey/icd
Tools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities

.Rbuildignore
.Rinstignore
.aspell/defaults.R
.aspell/words.pws
.covrignore
.gitattributes
.gitignore
.lintr
.travis.yml
CONTRIBUTING.md
COPYING
DESCRIPTION
NAMESPACE
NEWS.md R/RcppExports.R R/as_char_no_warn.R R/attr.R R/benchmark.R R/catch-routine-registration.R R/children.R R/children_alt.R R/class.R R/comorbid.R R/comorbid_alt.R R/condense.R R/convert.R R/datadocs.R R/diff_comorbid.R R/env.R R/explain-table.R R/explain.R R/factor_nosort.R R/filter.R R/fuzz.R R/generate_mappings.R R/generate_spelling.R R/generate_sysdata.R R/guess.R R/hcc.R R/icd-package.R R/manip.R R/parse-ahrq-ccs.R R/parse-comorbid.R R/parse-icd10.R R/parse-icd10cm-xml.R R/parse-rtf.R R/parse.R R/parse_hcc.R R/print.icd_comorbidity_map.R R/ranges.R R/ranges_alt.R R/real.R R/sas.R R/save_in_data_dir.R R/score.R R/sort.R R/sort_alt.R
R/sysdata.rda
R/to_data_raw.R R/unzip_single.R R/util-file.R R/util-test.R R/util.R R/valid.R R/zzz.R README.Rmd README.md
_config.yml
appveyor.yml
benchmarks/bench-comorbid.R benchmarks/bench-gen-hier.R benchmarks/bench-parse-rtf-lookup-fourth.R benchmarks/bench-parse-rtf.R
benchmarks/lookup-fourth.rda
benchmarks/rtf-fourth-out.rda
cleanup
configure
configure.ac
configure.win
cran-comments.md
data/.gitignore
data/icd10_map_ahrq.RData
data/icd10_map_cc.RData
data/icd10_map_elix.RData
data/icd10_map_quan_deyo.RData
data/icd10_map_quan_elix.RData
data/icd10_sub_chapters.RData
data/icd10cm2016.RData
data/icd9_majors.RData
data/icd9_map_ahrq.RData
data/icd9_map_cc.RData
data/icd9_map_elix.RData
data/icd9_map_multi_ccs.RData
data/icd9_map_quan_deyo.RData
data/icd9_map_quan_elix.RData
data/icd9_map_single_ccs.RData
data/icd9_sources.RData
data/icd9_sub_chapters.RData
data/icd9cm_billable.RData
data/icd9cm_hierarchy.RData
data/icd_chapters.R
data/icd_map_cc_hcc.RData
data/mappingNames.R
data/uranium_pathology.RData
data/vermont_dx.RData
icd.Rproj
inst/COPYING
inst/COPYRIGHTS
inst/data-raw/.gitignore
inst/data-raw/CMS28_DESC_LONG_DX.txt
inst/data-raw/CMS28_DESC_SHORT_DX.txt
inst/data-raw/CMS29_DESC_LONG_DX.101111.txt
inst/data-raw/CMS29_DESC_SHORT_DX.txt
inst/data-raw/CMS30_DESC_LONG_DX.080612.txt
inst/data-raw/CMS30_DESC_SHORT_DX.txt
inst/data-raw/CMS31_DESC_LONG_DX.txt
inst/data-raw/CMS31_DESC_SHORT_DX.txt
inst/data-raw/CMS32_DESC_LONG_DX.txt
inst/data-raw/CMS32_DESC_SHORT_DX.txt
inst/data-raw/Dtab09.RTF
inst/data-raw/Dtab12.rtf
inst/data-raw/I9DX_DESC.txt
inst/data-raw/I9diagnosesV25.txt
inst/data-raw/I9diagnosis.txt
inst/data-raw/ICD10_Charlson.sas
inst/data-raw/ICD10_Elixhauser.sas
inst/data-raw/ICD9_E_Charlson.sas
inst/data-raw/ICD9_E_Elixhauser.sas
inst/data-raw/Pathology_Office2007.accdb
inst/data-raw/V26.I.9.Diagnosis.txt
inst/data-raw/V27LONG_SHORT_DX_110909.csv
inst/data-raw/VTINP13.TXT
inst/data-raw/X.dxref.2015.csv
inst/data-raw/ccs_multi_dx_tool_2013.csv
inst/data-raw/ccs_multi_dx_tool_2015.csv
inst/data-raw/ccs_multi_pr_tool_2014.csv
inst/data-raw/comformat2012-2013.txt
inst/data-raw/comformat_icd10cm_2016.txt
inst/data-raw/comoanaly2012-2013.txt
inst/data-raw/icd10cm_order_2016.txt
inst/data-raw/icd10codes.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2007_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2008_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2009_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2010_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2011_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2012_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2013_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2014_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2015_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/hierarchy/2016_hierarchy.txt
inst/data-raw/icd_hcc_rawdata/icd10/2016_icd10hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2007_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2008_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2009_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2010_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2011_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2012_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2013_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2014_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2015_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/icd9/2016_icd9hcc.txt
inst/data-raw/icd_hcc_rawdata/labels/2007_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2008_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2009_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2010_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2011_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2012_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2013_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2014_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2015_labels.txt
inst/data-raw/icd_hcc_rawdata/labels/2016_labels.txt
inst/include/icd.h
inst/include/icd_RcppExports.h
inst/standalone/Makefile
inst/standalone/standalone
inst/standalone/standalone.cpp
inst/standalone/standalone.sh
man-roxygen/abbrev_names.R man-roxygen/billable.R man-roxygen/ccs-single.R man-roxygen/dotdotdot.R man-roxygen/hierarchy.R man-roxygen/icd9-any.R man-roxygen/icd9-decimal.R man-roxygen/icd9-short.R man-roxygen/icd9df.R man-roxygen/icd9field.R man-roxygen/icd_name.R man-roxygen/invert.R man-roxygen/isShort.R man-roxygen/leadingZeroes.R man-roxygen/mapping-icd9.R man-roxygen/mapping.R man-roxygen/mjr.R man-roxygen/mnr.R man-roxygen/offline.R man-roxygen/onlyBillable.R man-roxygen/onlyReal.R man-roxygen/parse-template.R man-roxygen/poa.R man-roxygen/poaField.R man-roxygen/poa_name.R man-roxygen/return.df.R man-roxygen/return_df.R man-roxygen/save_data.R man-roxygen/sep.R man-roxygen/short_code.R man-roxygen/stringsAsFactors.R man-roxygen/toParent.R man-roxygen/verbose.R man-roxygen/visitId.R man-roxygen/visit_name.R man-roxygen/warn.R man-roxygen/whitespace_ok.R man/apply_hier.Rd man/as.icd_short_diag.Rd man/as_char_no_warn.Rd man/attr_decimal_diag.Rd man/chapter_to_desc_range.Rd man/combine.Rd man/condense_explain_table.Rd man/condense_explain_table_worker.Rd man/convert.Rd man/cr.Rd man/env_to_vec_flip.Rd man/expect_chap_equal.Rd man/expect_chap_present.Rd man/expect_equal_no_icd.Rd man/factor_nosort.Rd man/fastIntToString.Rd man/fixSubchapterNa.Rd man/generate_random_short_icd10cm_bill.Rd man/generate_random_short_icd9.Rd man/generate_spelling.Rd man/generate_uranium_pathology.Rd man/generate_vermont_dx.Rd man/get_non_ASCII.Rd man/get_visit_name.Rd man/grapes-eine-grapes.Rd man/icd-package.Rd man/icd10_chapters.Rd man/icd10_comorbid_parent_search.Rd man/icd10_comorbid_parent_search_cpp.Rd man/icd10_generate_map_quan_deyo.Rd man/icd10_generate_map_quan_elix.Rd man/icd10_parse_cc.Rd man/icd10_sub_chapters.Rd man/icd10cm2016.Rd man/icd10cm_extract_sub_chapters.Rd man/icd10cm_get_all_defined.Rd man/icd9AddLeadingZeroesMajorSingle.Rd man/icd9AddLeadingZeroes_alt_ShortSingle.Rd man/icd9AppendMinors.Rd man/icd9ChildrenShort_alt_11.Rd man/icd9ChildrenShort_alt_Std.Rd man/icd9Comorbid_alt_Taskloop.Rd man/icd9MajMinToCode.Rd man/icd9MajMinToShortStd.Rd man/icd9RandomShort.Rd man/icd9_add_leading_zeroes_cpp.Rd man/icd9_chapters.Rd man/icd9_chapters_to_map.Rd man/icd9_drop_leading_zeroes.Rd man/icd9_expand_range_worker.Rd man/icd9_extract_alpha_numeric.Rd man/icd9_fetch_ahrq_ccs.Rd man/icd9_fetch_ahrq_sas.Rd man/icd9_generate_all_.Rd man/icd9_generate_map_elix.Rd man/icd9_generate_map_quan_elix.Rd man/icd9_generate_sources.Rd man/icd9_get_chapters.Rd man/icd9_is_n.Rd man/icd9_is_n_cpp.Rd man/icd9_map_ahrq.Rd man/icd9_map_elix.Rd man/icd9_map_hcc.Rd man/icd9_map_quan_deyo.Rd man/icd9_map_quan_elix.Rd man/icd9_map_single_ccs.Rd man/icd9_order_short.Rd man/icd9_parse_ahrq_ccs.Rd man/icd9_parse_ahrq_sas.Rd man/icd9_parse_cc.Rd man/icd9_parse_leaf_desc_ver.Rd man/icd9_parse_quan_deyo_sas.Rd man/icd9_sources.Rd man/icd9cm_billable.Rd man/icd9cm_generate_chapters_hierarchy.Rd man/icd9cm_get_billable.Rd man/icd9cm_hierarchy.Rd man/icd9cm_latest_edition.Rd man/icd_charlson.Rd man/icd_children.Rd man/icd_children_defined.Rd man/icd_classes_conflict.Rd man/icd_classes_ordered.Rd man/icd_comorbid.Rd man/icd_comorbid_common.Rd man/icd_comorbid_df_to_mat.Rd man/icd_comorbid_hcc.Rd man/icd_comorbid_hcc_worker.Rd man/icd_comorbid_mat_to_df.Rd man/icd_condense.Rd man/icd_count_codes.Rd man/icd_count_codes_wide.Rd man/icd_count_comorbid.Rd man/icd_decimal_to_parts.Rd man/icd_decimal_to_short.Rd man/icd_diff_comorbid.Rd man/icd_expand_minor.Rd man/icd_expand_range.Rd man/icd_expand_range.icd10cm.Rd man/icd_expand_range_major.Rd man/icd_explain.Rd man/icd_explain_table.Rd man/icd_explain_table_worker.Rd man/icd_filter_poa.Rd man/icd_filter_valid.Rd man/icd_generate_sysdata.Rd man/icd_get_billable.Rd man/icd_get_defined.Rd man/icd_get_invalid.Rd man/icd_get_major.Rd man/icd_get_valid.Rd man/icd_guess_pair_version.Rd man/icd_guess_short.Rd man/icd_guess_short_update.Rd man/icd_guess_version.Rd man/icd_guess_version_update.Rd man/icd_in_reference_code.Rd man/icd_is_billable.Rd man/icd_is_defined.Rd man/icd_is_major.Rd man/icd_is_valid.Rd man/icd_is_valid_major.Rd man/icd_long_to_wide.Rd man/icd_names_elix.Rd man/icd_parse_cc_hierarchy.Rd man/icd_poa_choices.Rd man/icd_short_to_decimal.Rd man/icd_short_to_parts.Rd man/icd_sort.Rd man/icd_update_everything.Rd man/icd_van_walraven.Rd man/icd_wide_to_long.Rd man/is.icd9.Rd man/logical_to_binary.Rd man/lookupComorbidByChunkFor.Rd man/lookupComorbid_alt_ByChunkForTaskloop.Rd man/named_list.Rd man/parse_leaf_desc_icd9cm_v27.Rd man/parse_leaf_descriptions_all.Rd man/print.icd_comorbidity_map.Rd man/random_string.Rd man/re_just.Rd man/regexec32.Rd man/rtf_fetch_year.Rd man/rtf_filter_excludes.Rd man/rtf_fix_duplicates.Rd man/rtf_fix_quirks_2015.Rd man/rtf_fix_unicode.Rd man/rtf_generate_fourth_lookup.Rd man/rtf_lookup_fourth.Rd man/rtf_main_filter.Rd man/rtf_parse_fifth_digit_range.Rd man/rtf_parse_lines.Rd man/rtf_parse_year.Rd man/rtf_strip.Rd man/sas_extract_let_strings.Rd man/sas_format_extract.Rd man/sas_parse_assignments.Rd man/save_in_data_dir.Rd man/set_icd_class.Rd man/shortcode_icd9.Rd man/str_extract.Rd man/str_match_all.Rd man/str_pair_match.Rd man/strim.Rd man/strip.Rd man/sub-sub-.icd_comorbidity_map.Rd man/subset_icd.Rd man/swap_names_vals.Rd man/trim.Rd man/unzip_single.Rd man/unzip_to_data_raw.Rd man/uranium_pathology.Rd man/vec_to_env_true.Rd man/vermont_dx.Rd
src/.gitignore
src/Makevars.in
src/Makevars.win
src/Makevars.win64
src/RcppExports.cpp
src/appendMinor.cpp
src/appendMinor.h
src/attr.cpp
src/attr.h
src/children.cpp
src/comorbid.cpp
src/comorbidCommon.cpp
src/comorbidCommon.h
src/comorbidIcd10.cpp
src/comorbidIcd10.h
src/comorbidSetup.cpp
src/comorbidSetup.h
src/comorbidSparse_alt.cpp.txt
src/comorbidTaskloop_alt.cpp
src/comorbid_alt.h
src/config.h.in
src/config.h.win
src/convert.cpp
src/convert.h
src/convert_alt.cpp
src/convert_alt.h
src/cutil.c
src/cutil.h
src/fastIntToString.cpp
src/fastIntToString.h
src/guess.cpp
src/guess.h
src/icd_types.h
src/is.cpp
src/is.h
src/local.h
src/longToWide.cpp
src/manip.cpp
src/manip.h
src/manip_alt.cpp
src/manip_alt.h
src/range-const.h
src/ranges.cpp
src/ranges.h
src/ranges_alt.cpp
src/ranges_alt.h
src/registration.c
src/test-cpp.cpp
src/test-runner.cpp
src/util.cpp
src/util.h
tests/test-all.R
tests/testthat/github133-b.rds
tests/testthat/github133_tiny_slice.txt
tests/testthat/helper-base.R tests/testthat/helper-icd10.R tests/testthat/test-attr.R tests/testthat/test-billable.R tests/testthat/test-ccs-calcs.R tests/testthat/test-children-icd10.R tests/testthat/test-class.R tests/testthat/test-comorbid-calcs-icd10.R tests/testthat/test-comorbid-calcs-icd9.R tests/testthat/test-comorbid-maps-icd10.R tests/testthat/test-comorbid-maps-icd9.R tests/testthat/test-condense.R tests/testthat/test-convert.R tests/testthat/test-cpp.R tests/testthat/test-examples.R tests/testthat/test-explain-table.R tests/testthat/test-explain.R tests/testthat/test-filter-icd10.R tests/testthat/test-filter-poa.R tests/testthat/test-future-explain-icd10.R tests/testthat/test-github133.R tests/testthat/test-guess.R tests/testthat/test-hcc.R tests/testthat/test-hierarchy.R tests/testthat/test-is.R tests/testthat/test-lints.R tests/testthat/test-longtowide.R tests/testthat/test-manip.R tests/testthat/test-openmp.R tests/testthat/test-parse-icd10.R tests/testthat/test-parse-icd9.R tests/testthat/test-parse.R tests/testthat/test-ranges-icd10.R tests/testthat/test-ranges.R tests/testthat/test-reshape.R tests/testthat/test-sample-data.R tests/testthat/test-sas.R tests/testthat/test-score.R tests/testthat/test-sort.R tests/testthat/test-spell.R tests/testthat/test-util.R tests/testthat/test-valid-icd10.R tests/testthat/test-valid.R
tools/Rcallgrind
tools/build_check_full.sh
tools/build_check_quick.sh
tools/build_check_valgrind.sh
tools/build_check_vquick.sh
tools/clang-static-code-analyze.sh
tools/class_test.R
tools/comorbid_crasher.sh
tools/comorbid_crasher_vt.sh
tools/comorbid_openmp_crash.sh
tools/comorbid_simple.sh
tools/debug.sh
tools/docker/build-rockicd2.sh
tools/docker/icd-check-docker/Dockerfile
tools/docker/icd-check-docker/in_docker_base.sh
tools/docker/icd-check-docker/in_docker_build_check.sh
tools/docker/icd-check-docker/in_docker_get_icd.sh
tools/docker/in_docker_base.sh
tools/docker/in_docker_build_check.sh
tools/docker/in_docker_check.sh
tools/docker/in_docker_get_icd.sh
tools/docker/in_docker_ldpreload_asan.sh
tools/docker/rock-r-devel-san.sh
tools/docker/rock-r-devel-ubsan-clang.sh
tools/docker/rock-r-devel.sh
tools/docker/rockall.sh
tools/docker/rockicd.sh
tools/docker/rockicd2.sh
tools/find_icd10cm_permutations.r
tools/flagoff.sh
tools/flagon.sh
tools/gdb_fun.sh
tools/induce-github138.sh
tools/induce-issue75.sh
tools/induce-segfault-icd10cm-children.sh
tools/induce-segfault-icd10cm-comorbid.sh
tools/install_full.sh
tools/install_quick.sh
tools/install_shared.sh
tools/iwyu.sh
tools/m4/openmp.m4
tools/package-registration.sh
tools/reversedep.R
tools/rprof-one-cmd.sh
tools/runRcppParallel.sh
tools/stripRTF.py
tools/test-cpp.sh
tools/tidy.sh
tools/undebug.sh
tools/valgrind-check.sh
tools/valgrind-cmd.sh
tools/valgrind-misc.sh
tools/valgrind-off.sh
tools/valgrind-on.sh
tools/valgrind-run.sh
tools/valgrind-test-filter.sh
vignettes/.gitignore
vignettes/Charlson_and_other_scores.Rmd vignettes/Comparing_Comorbidity_Mappings_Vignette.Rmd vignettes/Using_Hierarchical_Condition_Codes.Rmd vignettes/icd-10.Rmd vignettes/introduction.Rmd
jackwasey/icd documentation built on April 2, 2018, 8:29 p.m.