Man pages for jackwasey/icd
Comorbidity Calculations and Tools for ICD-9 and ICD-10 Codes
| apply_hier | Apply hierarchy and choose naming for each comorbidity map |
| as.comorbidity_map | Set the class of a named list to show it is a comorbidity... |
| as.decimal_diag | Get or set whether ICD codes have have an attribute... |
| attr_decimal_diag | Set ICD short-form diagnosis code attribute |
| attr_short_diag | Set short diagnosis flag in C++ |
| categorize_simple | Categorize codes according to a mapping |
| chapters_to_map | Convert chapters to lists of codes for use as a comorbidity... |
| charlson | Calculate Charlson Comorbidity Index (Charlson Score) |
| charlson_from_comorbid | Calculate Charlson scores from precomputed Charlson... |
| children | Get children of ICD codes |
| combine | Combine ICD codes |
| comorbid | Find comorbidities from ICD-9 codes. |
| comorbid_df_to_mat | convert comorbidity matrix to data frame |
| comorbid_hcc | Get Hierarchical Condition Codes (HCC) |
| comorbid_mat_to_df | convert comorbidity data frame from matrix |
| condense | Condense ICD-9 code by replacing complete families with... |
| convert | Convert ICD data between formats and structures. |
| count_codes | Count ICD codes or comorbidities for each patient |
| count_codes_wide | Count ICD codes given in wide format |
| count_comorbid | Count number of comorbidities per patient |
| cr | sequence columns of comorbidities |
| decimal_to_short | Convert Decimal format ICD codes to short format |
| diff_comorbid | show the difference between two comorbidity mappings |
| download_all_icd_data | Download all the additional data at once |
| expand_range | Generate a set of codes between two ICD codes including... |
| expand_range.icd10cm | Expand range of ICD-10 codes returning only defined codes in... |
| expand_range_major | Expand two major codes to a range |
| explain_code | Explain ICD-9 and ICD-10 codes in English |
| explain_table | Explain ICD-9 and ICD-10 codes in English from decimal... |
| explain_table_worker | generate table of ICD code explanations |
| filter_poa | Filters data frame based on present-on-arrival flag |
| filter_valid | Filter ICD codes by validity. |
| generate_neds_pts | Generate simulated 'NEDS' data for 'PCCC' and bigger wide... |
| get_billable | Get the subset of codes that are billable according to... |
| get_cim10fr2019 | Localised synonym for 'get_icd10fr2019', with French column... |
| get_defined | Select only defined ICD codes |
| get_icd10be2014 | Belgian ICD-10-BE |
| get_icd10be2014_pc | ICD-10-BE 2014 procedure codes |
| get_icd10be2017 | ICD-10-BE 2017 |
| get_icd10be2017_pc | ICD-10-BE 2017 procedure codes |
| get_icd10cm2014 | ICD-10-CM 2014 |
| get_icd10cm2014_pc | ICD-10-CM Procedure codes for 2014 |
| get_icd10cm2015 | ICD-10-CM 2015 |
| get_icd10cm2015_pc | ICD-10-CM Procedure codes for 2015 |
| get_icd10cm2016 | ICD-10-CM 2016 |
| get_icd10cm2016_pc | ICD-10-CM Procedure codes for 2016 |
| get_icd10cm2017 | ICD-10-CM 2017 |
| get_icd10cm2017_pc | ICD-10-CM Procedure codes for 2017 |
| get_icd10cm2018 | ICD-10-CM 2018 |
| get_icd10cm2018_pc | ICD-10-CM Procedure codes for 2018 |
| get_icd10cm2019 | ICD-10-CM 2019 |
| get_icd10cm2019_pc | ICD-10-CM Procedure Codes |
| get_icd10cm_available | Get the ICD-10-CM versions available in this package |
| get_icd10cm_latest | The latest available version of ICD-10-CM in this package |
| get_icd10cm_version | Get the data for a given version (four-digit year) of... |
| get_icd10fr2019 | French ICD-10-FR modification of WHO ICD-10 used in France |
| get_icd10who2008fr | 2008 WHO ICD-10 data in French |
| get_icd10who2016 | 2016 WHO ICD-10 data |
| get_icd9cm2014_leaf | ICD-9-CM, just billable/leaf codes |
| get_invalid | Get invalid ICD codes |
| get_leaf | Get billable ICD codes |
| get_valid | invalid subset of decimal or short_code ICD-9 codes |
| guess_short | Guess whether codes are 'short_code' or 'decimal_code' |
| guess_version | Guess version of ICD codes |
| icd10_chapters | ICD-10 chapters |
| icd10cm2019 | United States and Belgium ICD-10-CM |
| icd10_comorbid_reduce | ICD-10 comorbidities by reducing problem size |
| icd10_map_ahrq_pcs | AHRQ ICD-10-PCS categories |
| icd10_sub_chapters | ICD-10 sub-chapters |
| icd9_chapters | ICD-9 chapters |
| icd9cm2014_leaf | The final ICD-9-CM list of leaf ('billable') codes |
| icd9cm_hierarchy | ICD-9-CM diagnosis codes including leaf nodes and branch... |
| icd9MajMinToCode | Convert 'mjr' and 'mnr' vectors to single code |
| icd9_map_ahrq | AHRQ comorbidities |
| icd9_map_elix | Elixhauser comorbidities |
| icd9_map_hcc | Medicare Hierarchical Condition Categories |
| icd9_map_pccc | Pediatric Complex Chronic Conditions |
| icd9_map_quan_deyo | Quan adaptation of Deyo/Charlson comorbidities |
| icd9_map_quan_elix | Quan adaptation of Elixhauser comorbidities |
| icd9_map_single_ccs | Clinical Classifications Software (CCS) for ICD9/10-CM |
| icd9_sub_chapters | ICD-9 sub-chapters |
| icd-package | icd: Comorbidity Calculations and Tools for ICD-9 and ICD-10... |
| is_billable | Check whether a code is billable according to ICD-9-CM or... |
| is_defined | Check whether ICD-9 codes exist |
| is.icd9 | Test presence of ICD classes |
| is.icd_long_data | Test for class describing patient data |
| is_leaf | Determine whether codes are billable leaf-nodes |
| is_valid | Check whether ICD-9 codes are syntactically valid |
| is_valid_major | Test whether an ICD code is major |
| long_to_wide | Convert ICD data from long to wide format |
| names_elix | Comorbidity names |
| plot_comorbid | Basic ordered bar plot showing counts of each comorbidity |
| poa_choices | Present-on-admission flags |
| print.comorbidity_map | Print a comorbidity map |
| print.icd9 | Print ICD codes and comorbidity maps cleanly |
| set_icd10cm_active_year | Get or set the annual version of ICD-10-CM to use |
| set_icd_class | Construct ICD-9 and ICD-10 data types |
| set_icd_data_dir | Set up the data download cache, give permission to download... |
| shortcode_icd9 | set 'short_to_decimal' attribute |
| short_to_decimal | Convert ICD codes from short to decimal forms |
| sort_icd | Sort or order ICD-9 or ICD-10 codes according to published... |
| subset | extract subset(s) from ICD data |
| sub-sub-.comorbidity_map | Extract vector of codes from an ICD comorbidity map |
| uranium_pathology | United States Transuranium & Uranium Registries |
| van_walraven | Calculate van Walraven Elixhauser Score |
| vermont_dx | Hospital discharge data from Vermont |
| wide_to_long | Convert ICD data from wide to long format |
| wide_vs_long | Set the ICD data structure class of a 'matrix' or... |
| with_icd10cm_version | Evaluate code with a particular version of ICD-10-CM |
