pwmscores: max PWM scores for sequences
In jaime11/Transcription-Factor-Footprinting: ATAC-seq Quality Control
Description
Usage
Arguments
Value
Author(s)
Description
calculate the maximal PWM scores for each given sequences
Usage
1
pwmscores(pwm, subject)
Arguments
pwm
A Position Weight Matrix represented as a numeric matrix
with row names A, C, G and T.
subject
Typically a DNAString object.
A Views objecton
a DNAString subject,
a MaskedDNAString object,
or a single character string, are also supported.
IUPAC ambiguity letters in subject are ignored (i.e.
assigned weight 0) with a warning.
Value
a numeric vector
Author(s)
Jianhong
jaime11/Transcription-Factor-Footprinting documentation built on May 31, 2019, 8:48 p.m.
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Description Usage Arguments Value Author(s)
Description
calculate the maximal PWM scores for each given sequences
Usage
1 | pwmscores(pwm, subject)
|
Arguments
pwm |
A Position Weight Matrix represented as a numeric matrix with row names A, C, G and T. |
subject |
Typically a DNAString object.
A Views objecton
a DNAString subject,
a MaskedDNAString object,
or a single character string, are also supported.
IUPAC ambiguity letters in |
Value
a numeric vector
Author(s)
Jianhong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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