fragSizeDist: fragment size distribution

In jaime11/Transcription-Factor-Footprinting: ATAC-seq Quality Control

Description

estimate the fragment size of bams

Usage

fragSizeDist(bamFiles, bamFiles.labels, ylim = NULL, logYlim = NULL)

Arguments

bamFiles	A vector of characters indicates the file names of bams.
bamFiles.labels	labels of the bam files, used for pdf file naming.
ylim	numeric(2). ylim of the histogram.
logYlim	numeric(2). ylim of log-transformed histogram for the insert.

Value

Invisible fragment length distribution list.

Author(s)

Jianhong Ou

Examples

bamFiles <- system.file("extdata", "GL1.bam", package="ATACseqQC")
bamFiles.labels <- "GL1"
fragSizeDist(bamFiles, bamFiles.labels,
             ylim=c(0, 1e4), logYlim=log10(c(5e-3, 2)))

jaime11/Transcription-Factor-Footprinting documentation built on May 31, 2019, 8:48 p.m.