modified_sfbdrt: modified_sfbdrt: Modified the sfbdrt(sim.fbd.rateshift.taxa)...

In jaishimuku/WrightLab_FBD: Expanded Functions for Use with FossilSim

Description

sim.fbd.rateshift.taxa function from the FossilSim Package, but it returns a list of the fossil along with the SAtree object. It also adds an (h) column to the fossil dataframe so that the fossil count functions (summary statistic) will work.

Usage

modified_sfbdrt(n, numbsim, lambda, mu, psi, times, complete = FALSE)

Arguments

n	Number of extant taxa
numbsim	Number of trees to simulate
lambda	Speciation rate
mu	Extinction rate
psi	Fossil sampling rate. Input as a vector.
times	Vector of time intervals.
complete	Defaults to FALSE. If TRUE, the tree including the extint lineages and non-sampled lineages is returned.

Value

list(f,trees). Returns fossil object, f, and simulated SAtrees with n extant sampled tips

jaishimuku/WrightLab_FBD documentation built on July 17, 2020, 12:05 a.m.