sim_multiple_rows: sim_multiple_rows: Simulate tree from multiple rows and apply...

In jaishimuku/WrightLab_FBD: Expanded Functions for Use with FossilSim

Description

Function runs multiple simulations. Can be specified by row. Also provides summary statistics like total fossil count, fossil count per interval, and origin time.

Usage

sim_multiple_rows(
  data,
  extant,
  mus,
  lambdas,
  psis,
  intervals,
  by = FALSE,
  path = c()
)

Arguments

data	data frame
extant	Number of extant taxa
mus	Extinction rate
lambdas	Speciation rate
psis	Fossil sampling rate. Input as a vector
intervals	Vector of time intervals or time bins
by	Selects for specific rows. For example, by = 100 refers to sampling every 100th row. Defaults to FALSE. If FALSE, every row is sampled to produce a simulated phylo object.
path	Specify path to save

Value

summlist. An object describing useful summary statistics like total fossil count, fossil count per interval, and origin time

jaishimuku/WrightLab_FBD documentation built on July 17, 2020, 12:05 a.m.