IsUpOrDown: Check if gene is up- or down-regulated

In jakeyeung/scChIX: Deconvolving Multiplexed Histone Modifications in Single Cells.

Check if gene is up- or down-regulated

Description

Check if gene is up- or down-regulated

Usage

IsUpOrDown(dat.impute.lst, refmark, jgene, dat.meta.long)

Arguments

dat.impute.lst	list of matrices (rows are genes, columns are cells). Each matrix is a different histone mark
refmark	name of histone mark used to access specific matrix in dat.impute.lst
jgene	name of gene (row name) found in the matrix
dat.meta.long	data frame of metadata for individual cells. Column names include cell, mark, and ptime.expnorm (pseudotime)

Value

"up" if gene increase along pseudotime "down" if gene decreases along pseudotime

Examples

upordown <- IsUpOrDown(dat.impute.lst, refmark = jmark2, jgene = jgene, dat.meta.long = dat.meta.long)

jakeyeung/scChIX documentation built on May 7, 2023, 9:14 a.m.