Man pages for jaleesr/TrendCatcher_1.0.0
TrendCatcher: A Versitile R package for analyse longitudinal RNA-seq study
| cal_p | Calculate the significance of the dynamic signal for a single... |
| cal_time_p_single_gene | Calculate the significance of the dynamic signal for a single... |
| Check_CountTable_Format | Check the Input Count Table Format |
| combine_p_single_gene | Combine multiple p-value using Fisher's p-value combination... |
| curveFitting.new | CurveFitting function |
| draw_CurveComp | Draw DDEGs from one biological pathway from two master.list... |
| draw_CurveComp_Perm | Draw DDEGs from one biological pathway from two master.list... |
| draw_GeneTraj | Draw gene(s) trajectory with observed data and fitted data |
| draw_GOHeatmap | Draw GOHeatmap containing Terms from TimeHeatmap and included... |
| draw_TimeHeatmap_enrichR | Draw TimeHeatmap Using enrichR |
| draw_TimeHeatmap_GO | Draw TimeHeatmap Using Gene Ontology (GO) Enrichment |
| draw_TimeHeatmap_selGO | Subset TimeHeatmap by providing a manually selected... |
| draw_TrajClusterGrid | Draw Grouped DDEGs Trajectories in Grid Plot |
| draw_TrajClusterPie | Draw Grouped DDEGs Main-type and Sub-type Composition in... |
| fit_single_gene_const | Fit the baseline count data into a constant negative binomial... |
| fit_single_gene_spline | Fit the non-baseline count data into a smoothed ANOVA model. |
| get_GeneEnsembl2Symbol | ID convention (from ENSEMBL to SYMBOL) |
| get_rep_array | Get the replicate array from count table |
| get_Symbol2GeneEnsembl | ID convention (from SYMBOL to ENSEMBL) |
| get_time_array | Get the time array from count table |
| permutation.new | Permutation test |
| preprocess_TrendCatcher | Preprocessing for TrendCatcher |
| run_TrendCatcher | Run TrendCatcher Main Algorithm |
| transform_single_gene_df | Convert a single gene's count row number into data frame with... |
