draw_TrajClusterGrid: Draw Grouped DDEGs Trajectories in Grid Plot

In jaleesr/TrendCatcher_1.0.0: TrendCatcher: A Versitile R package for analyse longitudinal RNA-seq study

Draw Grouped DDEGs Trajectories in Grid Plot

Description

Group all DDEGs based on their sub-type trajectory patterns and plot their trajectories together, then layout all sub-type trajectory patterns which contains more than N genes in a grid plot. Each individual sub-grid plot is titled with sub-type trajectory pattern and number of genes included. X-axis is the time, Y-aixs is log2 transformed fitted count trajectory.

Usage

draw_TrajClusterGrid(
  master.list,
  min.traj.n = 10,
  save.as.PDF = NA,
  pdf.width = 10,
  pdf.height = 10
)

Arguments

master.list,	a list object. The output from run_TrendCatcher function, contains master.table element.
min.traj.n,	an integer variable. The minimum number of genes from the same sub-type trajectory. By default if 10.
save.as.PDF,	a string. The absolute file path to save the figure as PDF file if needed. If set to NA, will print the figure instead of saving it as PDF file.
pdf.width,	a numeric variable. The PDF file width size. By default is 10.
pdf.height,	a numeric variable. The PDF file height size. By default is 10.

jaleesr/TrendCatcher_1.0.0 documentation built on Jan. 29, 2024, 9:34 p.m.