fit_single_gene_const: Fit the baseline count data into a constant negative binomial...

In jaleesr/TrendCatcher_1.0.0: TrendCatcher: A Versitile R package for analyse longitudinal RNA-seq study

Fit the baseline count data into a constant negative binomial model.

Description

Fit the baseline count data into a constant negative binomial model.

Usage

fit_single_gene_const(
  count.arr,
  disp.var,
  MAXIT = 1000,
  RELTOL = 10^(-8),
  trace = 10
)

Arguments

count.arr,	a data frame returned from transform_single_gene_df, only with the baseline time.
disp.var,	the dispersion value estimated from DESeq2.
MAXIT,
RELTOL,	10*-8
trace,	10

Value

a list contain all the estimated value from NB model.

jaleesr/TrendCatcher_1.0.0 documentation built on Jan. 29, 2024, 9:34 p.m.