Description Usage Arguments Value Author(s) Examples
Compute test statistic X2, difference in pseudolikelihood of each SNP between full and null model.
1 |
Z |
n x 2 matrix of Z scores; Z[,1]=Z_d, Z[,2]=Z_a |
pars1 |
parameters of full model; in order, pi0, pi1, tau, sigma_1, sigma_2, rho |
pars0 |
parameters of null model; in order, pi0, pi1, tau, sigma_1, sigma_2, rho |
cond |
adjust for difference in likelihood of Z_a; 'conditional' pseudolikelihood difference |
vector of values of X2
James Liley
1 2 3 4 5 |
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