Description Usage Arguments Value Examples
Proccesses demultiplexed fasta files, finds identical reads and deletes them. The number of identical reads is retained in sequence headers. Condensed reads are saved as FASTA file.
1 | condense(fasta_soubor, prah = 10)
|
fasta_soubor |
file demultiplexed data |
prah |
cutoff for number of unique sequences, sequences with amount less than the cutoff are not saved in the final FASTA file |
None
1 | condense("demultiplexed_reads.fasta", prah=10)
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