readBlastResults: Load results of BLAST database search to R
In janmatula/GenDP: Tools for genotyping data processing
Description
Usage
Arguments
Value
Examples
Description
Loads BLAST search results in .txt format to R list structure.
Usage
1
readBlastResults(blastResultsFile, results = 10)
Arguments
blastResultsFile
.txt file containing results of BLAST database search obtained using the -outfmt 0 command.
results
number of top results for each query sequence that will be loaded to R
Value
List containing top BLAST atabase matches for each query sequence.
Examples
1
scoreList <- readBlastResults("BLAST_S1_fw_condensed.txt", results = 1000)
janmatula/GenDP documentation built on Jan. 29, 2021, 7:29 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Loads BLAST search results in .txt format to R list structure.
Usage
1 | readBlastResults(blastResultsFile, results = 10)
|
Arguments
blastResultsFile |
.txt file containing results of BLAST database search obtained using the -outfmt 0 command. |
results |
number of top results for each query sequence that will be loaded to R |
Value
List containing top BLAST atabase matches for each query sequence.
Examples
1 | scoreList <- readBlastResults("BLAST_S1_fw_condensed.txt", results = 1000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.