| binRep | Transform DNAStringSet to binary representation Transforms... |
| buildHashTable | Build hash dable |
| compareToBlast | Compare results of SSAHA database search to results of the... |
| condense | Demultiplexed data condensing |
| convert | Convert binary to int |
| demultiplex | Raw data demultiplexing |
| demultiplex_all | Continuous raw data demultiplexing |
| downloadDb | Database download |
| readBlastResults | Load results of BLAST database search to R |
| searchHashTable | Search hash table |
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