condense: Demultiplexed data condensing
In janmatula/genDP: Tools for genotyping data processing
Description
Usage
Arguments
Value
Examples
Description
Proccesses demultiplexed fasta files, finds identical reads and deletes them.
The number of identical reads is retained in sequence headers.
Condensed reads are saved as FASTA file.
Usage
1
condense(fasta_soubor, prah = 10)
Arguments
fasta_soubor
file demultiplexed data
prah
cutoff for number of unique sequences, sequences with amount less than
the cutoff are not saved in the final FASTA file
Value
None
Examples
1
condense("demultiplexed_reads.fasta", prah=10)
janmatula/genDP documentation built on Feb. 2, 2021, 7 p.m.
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Description Usage Arguments Value Examples
Description
Proccesses demultiplexed fasta files, finds identical reads and deletes them. The number of identical reads is retained in sequence headers. Condensed reads are saved as FASTA file.
Usage
1 | condense(fasta_soubor, prah = 10)
|
Arguments
fasta_soubor |
file demultiplexed data |
prah |
cutoff for number of unique sequences, sequences with amount less than the cutoff are not saved in the final FASTA file |
Value
None
Examples
1 | condense("demultiplexed_reads.fasta", prah=10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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