downloadDb: Database download
In janmatula/genDP: Tools for genotyping data processing
Description
Usage
Arguments
Value
Examples
Description
Downloads database from EBI ftp server.
Usage
1
2
downloadDb(URL, type = "nuc", directory = getwd(),
mergeIntoOneFasta = FALSE, name = "database")
Arguments
URL
URL to database on EBI
type
type of sequences (nuc for nucletide, prot for aminoacid)
directory
directory to which the database is saved
mergeIntoOneFasta
TRUE: merge all FASTA files to a single FASTA file
name
name of the merged FASTA file
Value
None
Examples
1
download_DB('ftp://ftp.ebi.ac.uk/pub/databases/ipd/mhc/nhp/')
janmatula/genDP documentation built on Feb. 2, 2021, 7 p.m.
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Description Usage Arguments Value Examples
Description
Downloads database from EBI ftp server.
Usage
1 2 | downloadDb(URL, type = "nuc", directory = getwd(),
mergeIntoOneFasta = FALSE, name = "database")
|
Arguments
URL |
URL to database on EBI |
type |
type of sequences (nuc for nucletide, prot for aminoacid) |
directory |
directory to which the database is saved |
mergeIntoOneFasta |
TRUE: merge all FASTA files to a single FASTA file |
name |
name of the merged FASTA file |
Value
None
Examples
1 | download_DB('ftp://ftp.ebi.ac.uk/pub/databases/ipd/mhc/nhp/')
|
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