inst/shiny-apps/shinyGEO/RData/getTestData.R
In jasdumas/shinyGEO: Gene Expression Omnibus Analysis with Shiny
#####################################################################
## Download testdata using first platform for given GSE
#####################################################################
GSE = "GSE60322"
SAVE.FILE = paste0(GSE, ".RData")
library(GEOquery)
GEO.test = getGEO(GSE)
GPL = sapply(GEO.test, annotation)[1]
CLINICAL.test = pData(GEO.test[[1]])
GPL.test = Table(getGEO(GPL))
save(CLINICAL.test, GEO.test, GPL.test, file = SAVE.FILE)
jasdumas/shinyGEO documentation built on June 4, 2022, 5:26 a.m.
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#####################################################################
## Download testdata using first platform for given GSE
#####################################################################
GSE = "GSE60322"
SAVE.FILE = paste0(GSE, ".RData")
library(GEOquery)
GEO.test = getGEO(GSE)
GPL = sapply(GEO.test, annotation)[1]
CLINICAL.test = pData(GEO.test[[1]])
GPL.test = Table(getGEO(GPL))
save(CLINICAL.test, GEO.test, GPL.test, file = SAVE.FILE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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