plotChromatogram: Plot ion chromatogram

In jasenfinch/profilePro: Unified Input and Output for Processing of Metabolomic Profiling Experiments

Plot ion chromatogram

Description

Plot ion chromatogram from MetaboProfile.

Usage

plotChromatogram(
  processed_data,
  cls = NULL,
  group = FALSE,
  alpha = 1,
  aggregationFun = "max",
  ...
)

## S4 method for signature 'MetaboProfile'
plotChromatogram(
  processed_data,
  cls = NULL,
  group = FALSE,
  alpha = 1,
  aggregationFun = "max",
  ...
)

Arguments

processed_data	S4 object of class MetaboProfile
cls	sample information column to use for plot colours.
group	average samples within groups. If cls is NULL, plot average chromatogram across all samples.
alpha	plot line transparancy alpha
aggregationFun	value to pass to xcms::chromatogram() for chromatogram type. Defaults to base peak ("max").
...	arguments to pass to erah::plotChr()

jasenfinch/profilePro documentation built on Feb. 2, 2023, 9:19 p.m.