NEWS.md

In jasenfinch/riches: Strucutral and Functional Enrichment Analyses

riches 0.3.0

• Added a NEWS.md file to track changes to the package.

• Replaced the example data set with a molecular formula assigned AnalysisData class object.

• Added a functionalEnrichment() method for the RandomForest S4 class.

• Removed the EnrichmentParameters S4 class and associated methods.

• Added example organism FELLA data for Brachypodium distachyon (bdi).

• Added the organismData() function as a convenience wrapper for loading and building KEGG graph data for FELLA enrichment analyses.

• Added accessor methods for the FunctionalEnrichment S4 class.

• Added example structural classifications.

• Added the structuralEnrichment() method for the RandomForest S4 class.

• Functional and structural enrichment analyses can now be performed on explanatory features split by feature trends for binary comparisons or regression using the split argument of functionEnrichment() and structuralEnrichment().

jasenfinch/riches documentation built on April 24, 2023, 9:45 a.m.