SXTpls: SXTpls

In jaspershen/SXTpls: Give the PLS score plot and other values.

Description

PLS model

Usage

SXTpls(sample=NULL,qc=NULL,info=NULL,
                 #used data
      scalemethod="auto", plsmethod=c("plsreg","plsr"),
      width=7,height=7,QC=FALSE,text=FALSE,ellipse=FALSE,
      color=c("palegreen","firebrick1","royalblue","yellow","black","cyan","gray48"),
      shape=c(17,19,15,18,2,8,11),cexa=1)

Arguments

sample:	a matrix whose column reorents peak and row represents sample
qc:	a matrix whose column reorents peak and row represents qc
info:	a matrix whose colum represent the classes of samples
scalemethod:	the scale method of sample, default is pareto
plsmethod:	which pls function you want to use, plsreg or plsr
width&heigh:	the width and heigh of plot, default are 7
QC:	the qc samples are drawn in the plot or not, default is FALSE
text:	the samples' names are writen in the plot or not, default is FALSE
ellipse:	the ellipse is drawn in the plot or not, default is FALSE
color:	the colors for the different classes of samples,
	default are c("green","red","blue","yellow","black","cyan","gray48")
shape:	the shapes for the different classes of samples, default are c(17,19,15,18,2,8,11)
cexa:	the size of the points in PLS score plot

Details

Package:	SXTpls
Type:	Package
Version:	1.1
Note for version 1.1:	Add the Q2cum, R2Xcum and R2Ycum barplot and output it.(2015-11-04)
Date:	2015-06-05# this is a good day for me
License:	No

Value

plsplot 2d:	PLS score plot 2 D
plsplot 3d:	PLS score plot 3 D
Q2cum plot:	barplot for Q2cum
n:	the number of best compents
pls1&pls2:	the PLS model of PLS regression
Q2cum:	the Q2cum of PLS model
vip:	R file contains vipmean and vipsd

Author(s)

Jasper Shen

Maintainer: Jasper Shen <[e-mail]>

References

nothing

See Also

plsr plspedot SXTvip SXTscale

Examples

nothing

jaspershen/SXTpls documentation built on May 18, 2019, 5:56 p.m.