knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  # fig.width = 7, 
  # fig.height = 5,
  warning = FALSE,
  message = TRUE,
  fig.path = "man/figures/",
  out.width = "100%"
)
library("badger")

tidymass

cat(
    badge_cran_release("tidymass", "green"),
    badge_code_size(ref = "tidymass/tidymass"),
    badge_dependencies(),
    badge_lifecycle()
    # badge_cran_download("badger", "grand-total", "green"),
    # badge_cran_download("badger", "last-month", "green"),
    # badge_cran_download("badger", "last-week", "green")
)

About

tidymass is a collections of R packages for mass spectrometry data processing, analysis.

Installation

You can install tidymass from Github.

if(!require(devtools)){
install.packages("devtools")
}
devtools::install_github("tidymass/tidymass")

Then you can use install_tidymass() to install all the packages in tidymass.

library(tidymass)
tidymass::install_tidymass(from = "github", force = FALSE)

Usage

Now, tidymass contains several packages:


metflow2

If you use lipidflow in you publication, please cite this publication:

X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, Z. Ma, N. Liu, and Z.-J. Zhu* (Corresponding Author), Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics, Nature Communications, 2019, 10: 1516.


metNormalizer

If you use lipidflow in you publication, please cite this publication:

X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, Z. Ma, N. Liu, and Z.-J. Zhu* (Corresponding Author), Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics, Nature Communications, 2019, 10: 1516.


metID

If you use lipidflow in you publication, please cite this publication:

X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, Z. Ma, N. Liu, and Z.-J. Zhu* (Corresponding Author), Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics, Nature Communications, 2019, 10: 1516.


lipidflow

If you use lipidflow in you publication, please cite this publication:

X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, Z. Ma, N. Liu, and Z.-J. Zhu* (Corresponding Author), Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics, Nature Communications, 2019, 10: 1516.


Need help?

If you have any quesitions about tidymass, please don't hesitate to email me (shenxt@stanford.edu).

shenxt1990

shenxt@stanford.edu

Twitter

M339, Alway Buidling, Cooper Lane, Palo Alto, CA 94304

Citation

If you use tidymass in you publication, please cite this publication:

X. Shen, R. Wang, X. Xiong, Y. Yin, Y. Cai, Z. Ma, N. Liu, and Z.-J. Zhu* (Corresponding Author), Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics, Nature Communications, 2019, 10: 1516.
Web Link.

Thanks very much!



jaspershen/laggedcor documentation built on Nov. 9, 2023, 3:44 p.m.