extractPeaks: extractPeaks
In jaspershen/metflow2: Comprehensitive tools for metabolomics data processing and data analysis

From mzXML data extract peaks according to IS table.

extractPeaks(
  path = ".",
  ppm = 15,
  threads = 4,
  is.table = "is.xlsx",
  mz = NULL,
  rt = NULL,
  rt.tolerance = 40
)

`path`	Work directory.
`ppm`	see xcms.
`threads`	Number of threads.
`is.table`	Peak table. Two columns, column 1 is name of peak, column 2 is m/z of peaks.
`mz`	mz
`rt`	rt
`rt.tolerance`	Rt tolerance.

Result contains EIC of peaks.

jaspershen/metflow2 documentation built on Aug. 15, 2021, 4:38 p.m.

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